Literature DB >> 27452366

Canonical DNA Repair Pathways Influence R-Loop-Driven Genome Instability.

Peter C Stirling1, Philip Hieter2.   

Abstract

DNA repair defects create cancer predisposition in humans by fostering a higher rate of mutations. While DNA repair is quite well characterized, recent studies have identified previously unrecognized relationships between DNA repair and R-loop-mediated genome instability. R-loops are three-stranded nucleic acid structures in which RNA binds to genomic DNA to displace a loop of single-stranded DNA. Mutations in homologous recombination, nucleotide excision repair, crosslink repair, and DNA damage checkpoints have all now been linked to formation and function of transcription-coupled R-loops. This perspective will summarize recent literature linking DNA repair to R-loop-mediated genomic instability and discuss how R-loops may contribute to mutagenesis in DNA-repair-deficient cancers.
Copyright © 2016 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  DNA repair; Fanconi Anemia; Fork protection; Genome Instability; R-loops

Mesh:

Substances:

Year:  2016        PMID: 27452366      PMCID: PMC5253333          DOI: 10.1016/j.jmb.2016.07.014

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  46 in total

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Authors:  M Tian; F W Alt
Journal:  J Biol Chem       Date:  2000-08-04       Impact factor: 5.157

2.  Sequence dependence of chromosomal R-loops at the immunoglobulin heavy-chain Smu class switch region.

Authors:  Feng-Ting Huang; Kefei Yu; Barbara B Balter; Erik Selsing; Zeliha Oruc; Ahmed Amine Khamlichi; Chih-Lin Hsieh; Michael R Lieber
Journal:  Mol Cell Biol       Date:  2007-06-11       Impact factor: 4.272

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Authors:  Alan J Herr; Scott R Kennedy; Gary M Knowels; Eric M Schultz; Bradley D Preston
Journal:  Genetics       Date:  2014-01-03       Impact factor: 4.562

Review 4.  Lessons from the cancer genome.

Authors:  Levi A Garraway; Eric S Lander
Journal:  Cell       Date:  2013-03-28       Impact factor: 41.582

Review 5.  DNA double strand break repair in mammalian cells.

Authors:  P Karran
Journal:  Curr Opin Genet Dev       Date:  2000-04       Impact factor: 5.578

6.  SHPRH and HLTF act in a damage-specific manner to coordinate different forms of postreplication repair and prevent mutagenesis.

Authors:  Jia-Ren Lin; Michelle K Zeman; Jia-Yun Chen; Muh-Ching Yee; Karlene A Cimprich
Journal:  Mol Cell       Date:  2011-03-10       Impact factor: 17.970

7.  RNase H2-initiated ribonucleotide excision repair.

Authors:  Justin L Sparks; Hyongi Chon; Susana M Cerritelli; Thomas A Kunkel; Erik Johansson; Robert J Crouch; Peter M Burgers
Journal:  Mol Cell       Date:  2012-08-02       Impact factor: 17.970

Review 8.  RNA Processing and Genome Stability: Cause and Consequence.

Authors:  Vihandha O Wickramasinghe; Ashok R Venkitaraman
Journal:  Mol Cell       Date:  2016-02-18       Impact factor: 17.970

9.  Site-specific DICER and DROSHA RNA products control the DNA-damage response.

Authors:  Sofia Francia; Flavia Michelini; Alka Saxena; Dave Tang; Michiel de Hoon; Viviana Anelli; Marina Mione; Piero Carninci; Fabrizio d'Adda di Fagagna
Journal:  Nature       Date:  2012-08-09       Impact factor: 49.962

10.  The homologous recombination machinery modulates the formation of RNA-DNA hybrids and associated chromosome instability.

Authors:  Lamia Wahba; Steven K Gore; Douglas Koshland
Journal:  Elife       Date:  2013-06-11       Impact factor: 8.140

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Authors:  Ravindra N Singh; Matthew D Howell; Eric W Ottesen; Natalia N Singh
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2.  Evolutionary History and Activity of RNase H1-Like Proteins in Arabidopsis thaliana.

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Review 3.  AU-Rich Element RNA Binding Proteins: At the Crossroads of Post-Transcriptional Regulation and Genome Integrity.

Authors:  Ahmed Sidali; Varsha Teotia; Nadeen Shaikh Solaiman; Nahida Bashir; Radhakrishnan Kanagaraj; John J Murphy; Kalpana Surendranath
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4.  The Driver of Extreme Human-Specific Olduvai Repeat Expansion Remains Highly Active in the Human Genome.

Authors:  Ilea E Heft; Yulia Mostovoy; Michal Levy-Sakin; Walfred Ma; Aaron J Stevens; Steven Pastor; Jennifer McCaffrey; Dario Boffelli; David I Martin; Ming Xiao; Martin A Kennedy; Pui-Yan Kwok; James M Sikela
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5.  qDRIP: a method to quantitatively assess RNA-DNA hybrid formation genome-wide.

Authors:  Magdalena P Crossley; Michael J Bocek; Stephan Hamperl; Tomek Swigut; Karlene A Cimprich
Journal:  Nucleic Acids Res       Date:  2020-08-20       Impact factor: 16.971

6.  Human mitochondrial degradosome prevents harmful mitochondrial R loops and mitochondrial genome instability.

Authors:  Sonia Silva; Lola P Camino; Andrés Aguilera
Journal:  Proc Natl Acad Sci U S A       Date:  2018-10-09       Impact factor: 11.205

Review 7.  Replication Fork Protection Factors Controlling R-Loop Bypass and Suppression.

Authors:  Emily Yun-Chia Chang; Peter C Stirling
Journal:  Genes (Basel)       Date:  2017-01-14       Impact factor: 4.096

Review 8.  The Role of Replication-Associated Repair Factors on R-Loops.

Authors:  Vaibhav Bhatia; Emilia Herrera-Moyano; Andrés Aguilera; Belén Gómez-González
Journal:  Genes (Basel)       Date:  2017-06-27       Impact factor: 4.096

9.  RTEL1 suppresses G-quadruplex-associated R-loops at difficult-to-replicate loci in the human genome.

Authors:  Wei Wu; Rahul Bhowmick; Ivan Vogel; Özgün Özer; Fiorella Ghisays; Roshan S Thakur; Esther Sanchez de Leon; Philipp H Richter; Liqun Ren; John H Petrini; Ian D Hickson; Ying Liu
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10.  San1 deficiency leads to cardiomyopathy due to excessive R-loop-associated DNA damage and cardiomyocyte hypoplasia.

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Journal:  Biochim Biophys Acta Mol Basis Dis       Date:  2021-07-31       Impact factor: 5.187

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