Literature DB >> 22330764

Transcription as a source of genome instability.

Nayun Kim1, Sue Jinks-Robertson.   

Abstract

Alterations in genome sequence and structure contribute to somatic disease, affect the fitness of subsequent generations and drive evolutionary processes. The crucial roles of highly accurate replication and efficient repair in maintaining overall genome integrity are well-known, but the more localized stability costs that are associated with transcribing DNA into RNA molecules are less appreciated. Here we review the diverse ways in which the essential process of transcription alters the underlying DNA template and thereby modifies the genetic landscape.

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Year:  2012        PMID: 22330764      PMCID: PMC3376450          DOI: 10.1038/nrg3152

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  126 in total

1.  Human gene organization driven by the coordination of replication and transcription.

Authors:  Maxime Huvet; Samuel Nicolay; Marie Touchon; Benjamin Audit; Yves d'Aubenton-Carafa; Alain Arneodo; Claude Thermes
Journal:  Genome Res       Date:  2007-08-03       Impact factor: 9.043

2.  Activation-induced cytidine deaminase action is strongly stimulated by mutations of the THO complex.

Authors:  Belén Gómez-González; Andrés Aguilera
Journal:  Proc Natl Acad Sci U S A       Date:  2007-05-08       Impact factor: 11.205

3.  Gene transcription increases DNA damage-induced mutagenesis in mammalian stem cells.

Authors:  Giel Hendriks; Fabienne Calléja; Harry Vrieling; Leon H F Mullenders; Jacob G Jansen; Niels de Wind
Journal:  DNA Repair (Amst)       Date:  2008-06-09

4.  Transcription-induced CAG repeat contraction in human cells is mediated in part by transcription-coupled nucleotide excision repair.

Authors:  Yunfu Lin; John H Wilson
Journal:  Mol Cell Biol       Date:  2007-06-25       Impact factor: 4.272

5.  Transcription-associated mutagenesis in yeast is directly proportional to the level of gene expression and influenced by the direction of DNA replication.

Authors:  Nayun Kim; Amy L Abdulovic; Regan Gealy; Malcolm J Lippert; Sue Jinks-Robertson
Journal:  DNA Repair (Amst)       Date:  2007-03-29

6.  Transcription-associated recombination is dependent on replication in Mammalian cells.

Authors:  Ponnari Gottipati; Tobias N Cassel; Linda Savolainen; Thomas Helleday
Journal:  Mol Cell Biol       Date:  2007-10-29       Impact factor: 4.272

Review 7.  Expandable DNA repeats and human disease.

Authors:  Sergei M Mirkin
Journal:  Nature       Date:  2007-06-21       Impact factor: 49.962

8.  RNA-templated DNA repair.

Authors:  Francesca Storici; Katarzyna Bebenek; Thomas A Kunkel; Dmitry A Gordenin; Michael A Resnick
Journal:  Nature       Date:  2007-04-11       Impact factor: 49.962

Review 9.  Avoiding and resolving conflicts between DNA replication and transcription.

Authors:  Christian J Rudolph; Paraminder Dhillon; Timothy Moore; Robert G Lloyd
Journal:  DNA Repair (Amst)       Date:  2007-03-30

10.  A persistent RNA.DNA hybrid formed by transcription of the Friedreich ataxia triplet repeat in live bacteria, and by T7 RNAP in vitro.

Authors:  Ed Grabczyk; Miriam Mancuso; Mimi C Sammarco
Journal:  Nucleic Acids Res       Date:  2007-08-09       Impact factor: 16.971

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  154 in total

Review 1.  Regulation of recombination and genomic maintenance.

Authors:  Wolf-Dietrich Heyer
Journal:  Cold Spring Harb Perspect Biol       Date:  2015-08-03       Impact factor: 10.005

2.  Transcription-associated processes cause DNA double-strand breaks and translocations in neural stem/progenitor cells.

Authors:  Bjoern Schwer; Pei-Chi Wei; Amelia N Chang; Jennifer Kao; Zhou Du; Robin M Meyers; Frederick W Alt
Journal:  Proc Natl Acad Sci U S A       Date:  2016-02-12       Impact factor: 11.205

Review 3.  RNA polymerase between lesion bypass and DNA repair.

Authors:  Alexandra M Deaconescu
Journal:  Cell Mol Life Sci       Date:  2013-06-27       Impact factor: 9.261

Review 4.  Lingering Questions about Enhancer RNA and Enhancer Transcription-Coupled Genomic Instability.

Authors:  Gerson Rothschild; Uttiya Basu
Journal:  Trends Genet       Date:  2017-01-10       Impact factor: 11.639

5.  Insertions and Deletions Target Lineage-Defining Genes in Human Cancers.

Authors:  Marcin Imielinski; Guangwu Guo; Matthew Meyerson
Journal:  Cell       Date:  2017-01-12       Impact factor: 41.582

Review 6.  Splicing alterations contributing to cancer hallmarks in the liver: central role of dedifferentiation and genome instability.

Authors:  Maddalen Jimenez; María Arechederra; Matías A Ávila; Carmen Berasain
Journal:  Transl Gastroenterol Hepatol       Date:  2018-10-31

7.  Nuclear Proximity of Mtr4 to RNA Exosome Restricts DNA Mutational Asymmetry.

Authors:  Junghyun Lim; Pankaj Kumar Giri; David Kazadi; Brice Laffleur; Wanwei Zhang; Veronika Grinstein; Evangelos Pefanis; Lewis M Brown; Erik Ladewig; Ophélie Martin; Yuling Chen; Raul Rabadan; François Boyer; Gerson Rothschild; Michel Cogné; Eric Pinaud; Haiteng Deng; Uttiya Basu
Journal:  Cell       Date:  2017-04-20       Impact factor: 41.582

8.  Constitutively active Artemis nuclease recognizes structures containing single-stranded DNA configurations.

Authors:  Nicholas R Pannunzio; Michael R Lieber
Journal:  DNA Repair (Amst)       Date:  2019-07-26

9.  Frequency of intron loss correlates with processed pseudogene abundance: a novel strategy to test the reverse transcriptase model of intron loss.

Authors:  Tao Zhu; Deng-Ke Niu
Journal:  BMC Biol       Date:  2013-03-05       Impact factor: 7.431

10.  No gene-specific optimization of mutation rate in Escherichia coli.

Authors:  Xiaoshu Chen; Jianzhi Zhang
Journal:  Mol Biol Evol       Date:  2013-03-26       Impact factor: 16.240

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