Literature DB >> 26709871

Combinatorial biosynthesis of RiPPs: docking with marine life.

Debosmita Sardar1, Eric W Schmidt2.   

Abstract

Ribosomally synthesized natural products are found in all forms of life. Their biosynthesis uses simple ribosomally synthesized peptides as starting materials that are transformed into complex structures via posttranslational modifications, enriched with elaborate chemical scaffolds that make them desirable as pharmacological tools. In addition, these natural products often exhibit combinatorial biosynthesis, making them attractive targets for engineering. An increasing knowledge of their biosynthetic machinery has provided key insights into their fascinating chemistry. Marine organisms have been a rich source of this class of natural products and here we review the lessons learned from marine life that enables exploitation of their potential for combinatorial engineering, opening up new routes for peptide-based drug discovery.
Copyright © 2015 Elsevier Ltd. All rights reserved.

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Year:  2015        PMID: 26709871      PMCID: PMC4870094          DOI: 10.1016/j.cbpa.2015.11.016

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  54 in total

1.  One-pot synthesis of azoline-containing peptides in a cell-free translation system integrated with a posttranslational cyclodehydratase.

Authors:  Yuki Goto; Yumi Ito; Yasuharu Kato; Shotaro Tsunoda; Hiroaki Suga
Journal:  Chem Biol       Date:  2014-05-22

Review 2.  Chemically modified tandem repeats in proteins: natural combinatorial peptide libraries.

Authors:  Stephen M Fuchs
Journal:  ACS Chem Biol       Date:  2012-11-28       Impact factor: 5.100

3.  Expanding the chemical diversity of lasso peptide MccJ25 with genetically encoded noncanonical amino acids.

Authors:  Frank J Piscotta; Jeffery M Tharp; Wenshe R Liu; A James Link
Journal:  Chem Commun (Camb)       Date:  2014-11-18       Impact factor: 6.222

4.  Engineering unnatural variants of plantazolicin through codon reprogramming.

Authors:  Caitlin D Deane; Joel O Melby; Katie J Molohon; Aziz R Susarrey; Douglas A Mitchell
Journal:  ACS Chem Biol       Date:  2013-07-03       Impact factor: 5.100

Review 5.  Structure and mechanism of lanthipeptide biosynthetic enzymes.

Authors:  Wilfred A van der Donk; Satish K Nair
Journal:  Curr Opin Struct Biol       Date:  2014-10-14       Impact factor: 6.809

Review 6.  Trading molecules and tracking targets in symbiotic interactions.

Authors:  Eric W Schmidt
Journal:  Nat Chem Biol       Date:  2008-08       Impact factor: 15.040

7.  A price to pay for relaxed substrate specificity: a comparative kinetic analysis of the class II lanthipeptide synthetases ProcM and HalM2.

Authors:  Christopher J Thibodeaux; Taekjip Ha; Wilfred A van der Donk
Journal:  J Am Chem Soc       Date:  2014-12-04       Impact factor: 15.419

8.  The cyanobactin heterocyclase enzyme: a processive adenylase that operates with a defined order of reaction.

Authors:  Jesko Koehnke; Andrew F Bent; David Zollman; Kieran Smith; Wael E Houssen; Xiaofeng Zhu; Greg Mann; Tomas Lebl; Richard Scharff; Sally Shirran; Catherine H Botting; Marcel Jaspars; Ulrich Schwarz-Linek; James H Naismith
Journal:  Angew Chem Int Ed Engl       Date:  2013-11-08       Impact factor: 15.336

9.  Recognition sequences and substrate evolution in cyanobactin biosynthesis.

Authors:  Debosmita Sardar; Elizabeth Pierce; John A McIntosh; Eric W Schmidt
Journal:  ACS Synth Biol       Date:  2014-03-26       Impact factor: 5.110

10.  High divergence of the precursor peptides in combinatorial lanthipeptide biosynthesis.

Authors:  Qi Zhang; Xiao Yang; Huan Wang; Wilfred A van der Donk
Journal:  ACS Chem Biol       Date:  2014-10-02       Impact factor: 5.100

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  14 in total

1.  Enzymatic N- and C-Protection in Cyanobactin RiPP Natural Products.

Authors:  Debosmita Sardar; Yue Hao; Zhenjian Lin; Maho Morita; Satish K Nair; Eric W Schmidt
Journal:  J Am Chem Soc       Date:  2017-02-15       Impact factor: 15.419

2.  Heterologous production of a new lasso peptide brevunsin in Sphingomonas subterranea.

Authors:  Shinya Kodani; Hikaru Hemmi; Yuto Miyake; Issara Kaweewan; Hiroyuki Nakagawa
Journal:  J Ind Microbiol Biotechnol       Date:  2018-09-06       Impact factor: 3.346

3.  Directing Biosynthesis: Practical Supply of Natural and Unnatural Cyanobactins.

Authors:  D Sardar; M D Tianero; E W Schmidt
Journal:  Methods Enzymol       Date:  2016-03-16       Impact factor: 1.600

4.  Structural Insights into Thioether Bond Formation in the Biosynthesis of Sactipeptides.

Authors:  Tyler L Grove; Paul M Himes; Sungwon Hwang; Hayretin Yumerefendi; Jeffrey B Bonanno; Brian Kuhlman; Steven C Almo; Albert A Bowers
Journal:  J Am Chem Soc       Date:  2017-08-21       Impact factor: 15.419

Review 5.  Parallel lives of symbionts and hosts: chemical mutualism in marine animals.

Authors:  Maho Morita; Eric W Schmidt
Journal:  Nat Prod Rep       Date:  2018-04-25       Impact factor: 13.423

6.  Ribosomal Natural Products, Tailored To Fit.

Authors:  Michael A Funk; Wilfred A van der Donk
Journal:  Acc Chem Res       Date:  2017-07-06       Impact factor: 22.384

7.  Control of Nucleophile Chemoselectivity in Cyanobactin YcaO Heterocyclases PatD and TruD.

Authors:  Wenjia Gu; Yiwu Zheng; Taras Pogorelov; Satish K Nair; Eric W Schmidt
Journal:  ACS Chem Biol       Date:  2022-04-14       Impact factor: 4.634

Review 8.  The Biochemistry and Structural Biology of Cyanobactin Pathways: Enabling Combinatorial Biosynthesis.

Authors:  Wenjia Gu; Shi-Hui Dong; Snigdha Sarkar; Satish K Nair; Eric W Schmidt
Journal:  Methods Enzymol       Date:  2018-05-04       Impact factor: 1.600

Review 9.  YcaO-Dependent Posttranslational Amide Activation: Biosynthesis, Structure, and Function.

Authors:  Brandon J Burkhart; Christopher J Schwalen; Greg Mann; James H Naismith; Douglas A Mitchell
Journal:  Chem Rev       Date:  2017-03-03       Impact factor: 60.622

Review 10.  Renewed interests in the discovery of bioactive actinomycete metabolites driven by emerging technologies.

Authors:  Jenifer Ossai; Behnam Khatabi; S Eric Nybo; Madan K Kharel
Journal:  J Appl Microbiol       Date:  2021-07-29       Impact factor: 3.772

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