Literature DB >> 35420020

Control of Nucleophile Chemoselectivity in Cyanobactin YcaO Heterocyclases PatD and TruD.

Wenjia Gu1, Yiwu Zheng, Taras Pogorelov, Satish K Nair, Eric W Schmidt1.   

Abstract

Members of the YcaO superfamily are among the most common post-translational modification enzymes in natural product biosynthesis, with wide usage in biotechnology and synthetic biology applications. Here, we use domain-swapped chimeras and discovered unstructured regions in cyanobactin YcaOs that guide interactions with the substrates, governing access to interior amino acids in the substrates and explaining the chemoselectivity between PatD and TruD. These results define how the cyanobactin heterocyclases modify exceptionally sequence diverse substrates, yet with a high degree of positional and nucleophile selectivity.

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Year:  2022        PMID: 35420020      PMCID: PMC9531582          DOI: 10.1021/acschembio.2c00147

Source DB:  PubMed          Journal:  ACS Chem Biol        ISSN: 1554-8929            Impact factor:   4.634


  42 in total

1.  Insights into the Dynamic Structural Properties of a Lanthipeptide Synthetase using Hydrogen-Deuterium Exchange Mass Spectrometry.

Authors:  Yeganeh Habibi; Kevin A Uggowitzer; Hassan Issak; Christopher J Thibodeaux
Journal:  J Am Chem Soc       Date:  2019-09-06       Impact factor: 15.419

2.  Ribosomal route to small-molecule diversity.

Authors:  Ma Diarey B Tianero; Mohamed S Donia; Travis S Young; Peter G Schultz; Eric W Schmidt
Journal:  J Am Chem Soc       Date:  2011-12-22       Impact factor: 15.419

3.  Three Principles of Diversity-Generating Biosynthesis.

Authors:  Wenjia Gu; Eric W Schmidt
Journal:  Acc Chem Res       Date:  2017-09-11       Impact factor: 22.384

Review 4.  Combinatorial biosynthesis of RiPPs: docking with marine life.

Authors:  Debosmita Sardar; Eric W Schmidt
Journal:  Curr Opin Chem Biol       Date:  2015-12-19       Impact factor: 8.822

5.  YcaO domains use ATP to activate amide backbones during peptide cyclodehydrations.

Authors:  Kyle L Dunbar; Joel O Melby; Douglas A Mitchell
Journal:  Nat Chem Biol       Date:  2012-04-22       Impact factor: 15.040

6.  Macroamidine Formation in Bottromycins Is Catalyzed by a Divergent YcaO Enzyme.

Authors:  Laura Franz; Sebastian Adam; Javier Santos-Aberturas; Andrew W Truman; Jesko Koehnke
Journal:  J Am Chem Soc       Date:  2017-12-05       Impact factor: 16.383

7.  Minimal lactazole scaffold for in vitro thiopeptide bioengineering.

Authors:  Alexander A Vinogradov; Morito Shimomura; Yuki Goto; Taro Ozaki; Shumpei Asamizu; Yoshinori Sugai; Hiroaki Suga; Hiroyasu Onaka
Journal:  Nat Commun       Date:  2020-05-08       Impact factor: 14.919

8.  Structural analysis of leader peptide binding enables leader-free cyanobactin processing.

Authors:  Jesko Koehnke; Greg Mann; Andrew F Bent; Hannes Ludewig; Sally Shirran; Catherine Botting; Tomas Lebl; Wael Houssen; Marcel Jaspars; James H Naismith
Journal:  Nat Chem Biol       Date:  2015-06-22       Impact factor: 15.040

9.  The cyanobactin heterocyclase enzyme: a processive adenylase that operates with a defined order of reaction.

Authors:  Jesko Koehnke; Andrew F Bent; David Zollman; Kieran Smith; Wael E Houssen; Xiaofeng Zhu; Greg Mann; Tomas Lebl; Richard Scharff; Sally Shirran; Catherine H Botting; Marcel Jaspars; Ulrich Schwarz-Linek; James H Naismith
Journal:  Angew Chem Int Ed Engl       Date:  2013-11-08       Impact factor: 15.336

10.  Architecture of Microcin B17 Synthetase: An Octameric Protein Complex Converting a Ribosomally Synthesized Peptide into a DNA Gyrase Poison.

Authors:  Dmitry Ghilarov; Clare E M Stevenson; Dmitrii Y Travin; Julia Piskunova; Marina Serebryakova; Anthony Maxwell; David M Lawson; Konstantin Severinov
Journal:  Mol Cell       Date:  2019-01-17       Impact factor: 17.970

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