Literature DB >> 27417922

Directing Biosynthesis: Practical Supply of Natural and Unnatural Cyanobactins.

D Sardar1, M D Tianero1, E W Schmidt2.   

Abstract

The increasingly rapid accumulation of genomic information is revolutionizing natural products discovery. However, the translation of sequence data to chemical products remains a challenge. Here, we detail methods used to circumvent the supply problem of cyanobactin natural products, both by engineered synthesis in Escherichia coli and by using purified enzymes in vitro. Such methodologies exploit nature's strategies of combinatorial chemistry in the cyanobactin class of RiPP natural products. As a result, it is possible to synthesize a wide variety of natural and unnatural compounds.
© 2016 Elsevier Inc. All rights reserved.

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Keywords:  Diversity-generating metabolism; Marine natural products; Metabolic engineering; Ribosomally synthesized and posttranslationally modified peptide; Secondary metabolism

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Year:  2016        PMID: 27417922      PMCID: PMC5764895          DOI: 10.1016/bs.mie.2016.02.012

Source DB:  PubMed          Journal:  Methods Enzymol        ISSN: 0076-6879            Impact factor:   1.600


  36 in total

1.  Widespread occurrence and lateral transfer of the cyanobactin biosynthesis gene cluster in cyanobacteria.

Authors:  Niina Leikoski; David P Fewer; Kaarina Sivonen
Journal:  Appl Environ Microbiol       Date:  2008-12-01       Impact factor: 4.792

Review 2.  Expanding the enzyme universe: accessing non-natural reactions by mechanism-guided directed evolution.

Authors:  Hans Renata; Z Jane Wang; Frances H Arnold
Journal:  Angew Chem Int Ed Engl       Date:  2015-02-03       Impact factor: 15.336

3.  Structures of cyanobactin maturation enzymes define a family of transamidating proteases.

Authors:  Vinayak Agarwal; Elizabeth Pierce; John McIntosh; Eric W Schmidt; Satish K Nair
Journal:  Chem Biol       Date:  2012-11-21

4.  Enzymatic basis of ribosomal peptide prenylation in cyanobacteria.

Authors:  John A McIntosh; Mohamed S Donia; Satish K Nair; Eric W Schmidt
Journal:  J Am Chem Soc       Date:  2011-08-04       Impact factor: 15.419

5.  Modularity of RiPP Enzymes Enables Designed Synthesis of Decorated Peptides.

Authors:  Debosmita Sardar; Zhenjian Lin; Eric W Schmidt
Journal:  Chem Biol       Date:  2015-07-09

6.  Natural products version 2.0: connecting genes to molecules.

Authors:  Christopher T Walsh; Michael A Fischbach
Journal:  J Am Chem Soc       Date:  2010-03-03       Impact factor: 15.419

Review 7.  Cyanobactins-ribosomal cyclic peptides produced by cyanobacteria.

Authors:  Kaarina Sivonen; Niina Leikoski; David P Fewer; Jouni Jokela
Journal:  Appl Microbiol Biotechnol       Date:  2010-02-27       Impact factor: 4.813

8.  Evolution of lanthipeptide synthetases.

Authors:  Qi Zhang; Yi Yu; Juan E Vélasquez; Wilfred A van der Donk
Journal:  Proc Natl Acad Sci U S A       Date:  2012-10-15       Impact factor: 11.205

Review 9.  Ribosomally synthesized and post-translationally modified peptide natural products: overview and recommendations for a universal nomenclature.

Authors:  Paul G Arnison; Mervyn J Bibb; Gabriele Bierbaum; Albert A Bowers; Tim S Bugni; Grzegorz Bulaj; Julio A Camarero; Dominic J Campopiano; Gregory L Challis; Jon Clardy; Paul D Cotter; David J Craik; Michael Dawson; Elke Dittmann; Stefano Donadio; Pieter C Dorrestein; Karl-Dieter Entian; Michael A Fischbach; John S Garavelli; Ulf Göransson; Christian W Gruber; Daniel H Haft; Thomas K Hemscheidt; Christian Hertweck; Colin Hill; Alexander R Horswill; Marcel Jaspars; Wendy L Kelly; Judith P Klinman; Oscar P Kuipers; A James Link; Wen Liu; Mohamed A Marahiel; Douglas A Mitchell; Gert N Moll; Bradley S Moore; Rolf Müller; Satish K Nair; Ingolf F Nes; Gillian E Norris; Baldomero M Olivera; Hiroyasu Onaka; Mark L Patchett; Joern Piel; Martin J T Reaney; Sylvie Rebuffat; R Paul Ross; Hans-Georg Sahl; Eric W Schmidt; Michael E Selsted; Konstantin Severinov; Ben Shen; Kaarina Sivonen; Leif Smith; Torsten Stein; Roderich D Süssmuth; John R Tagg; Gong-Li Tang; Andrew W Truman; John C Vederas; Christopher T Walsh; Jonathan D Walton; Silke C Wenzel; Joanne M Willey; Wilfred A van der Donk
Journal:  Nat Prod Rep       Date:  2013-01       Impact factor: 13.423

10.  An efficient method for the in vitro production of azol(in)e-based cyclic peptides.

Authors:  Wael E Houssen; Andrew F Bent; Andrew R McEwan; Nathalie Pieiller; Jioji Tabudravu; Jesko Koehnke; Greg Mann; Rosemary I Adaba; Louise Thomas; Usama W Hawas; Huanting Liu; Ulrich Schwarz-Linek; Margaret C M Smith; James H Naismith; Marcel Jaspars
Journal:  Angew Chem Int Ed Engl       Date:  2014-10-21       Impact factor: 15.336

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  8 in total

Review 1.  Parallel lives of symbionts and hosts: chemical mutualism in marine animals.

Authors:  Maho Morita; Eric W Schmidt
Journal:  Nat Prod Rep       Date:  2018-04-25       Impact factor: 13.423

Review 2.  The Biochemistry and Structural Biology of Cyanobactin Pathways: Enabling Combinatorial Biosynthesis.

Authors:  Wenjia Gu; Shi-Hui Dong; Snigdha Sarkar; Satish K Nair; Eric W Schmidt
Journal:  Methods Enzymol       Date:  2018-05-04       Impact factor: 1.600

Review 3.  Engineering of new-to-nature ribosomally synthesized and post-translationally modified peptide natural products.

Authors:  Chunyu Wu; Wilfred A van der Donk
Journal:  Curr Opin Biotechnol       Date:  2021-02-05       Impact factor: 10.279

Review 4.  New developments in RiPP discovery, enzymology and engineering.

Authors:  Manuel Montalbán-López; Thomas A Scott; Sangeetha Ramesh; Imran R Rahman; Auke J van Heel; Jakob H Viel; Vahe Bandarian; Elke Dittmann; Olga Genilloud; Yuki Goto; María José Grande Burgos; Colin Hill; Seokhee Kim; Jesko Koehnke; John A Latham; A James Link; Beatriz Martínez; Satish K Nair; Yvain Nicolet; Sylvie Rebuffat; Hans-Georg Sahl; Dipti Sareen; Eric W Schmidt; Lutz Schmitt; Konstantin Severinov; Roderich D Süssmuth; Andrew W Truman; Huan Wang; Jing-Ke Weng; Gilles P van Wezel; Qi Zhang; Jin Zhong; Jörn Piel; Douglas A Mitchell; Oscar P Kuipers; Wilfred A van der Donk
Journal:  Nat Prod Rep       Date:  2020-09-16       Impact factor: 15.111

Review 5.  Expanding beyond canonical metabolism: Interfacing alternative elements, synthetic biology, and metabolic engineering.

Authors:  Kevin B Reed; Hal S Alper
Journal:  Synth Syst Biotechnol       Date:  2017-12-19

Review 6.  Biocatalytic synthesis of peptidic natural products and related analogues.

Authors:  Dake Liu; Garret M Rubin; Dipesh Dhakal; Manyun Chen; Yousong Ding
Journal:  iScience       Date:  2021-05-04

7.  Characterization of the Fast and Promiscuous Macrocyclase from Plant PCY1 Enables the Use of Simple Substrates.

Authors:  Hannes Ludewig; Clarissa M Czekster; Emilia Oueis; Elizabeth S Munday; Mohammed Arshad; Silvia A Synowsky; Andrew F Bent; James H Naismith
Journal:  ACS Chem Biol       Date:  2018-02-12       Impact factor: 5.100

Review 8.  Ascidian Toxins with Potential for Drug Development.

Authors:  Dianne J Watters
Journal:  Mar Drugs       Date:  2018-05-13       Impact factor: 5.118

  8 in total

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