Literature DB >> 26585388

A 3' Poly(A) Tract Is Required for LINE-1 Retrotransposition.

Aurélien J Doucet1, Jeremy E Wilusz2, Tomoichiro Miyoshi3, Ying Liu4, John V Moran5.   

Abstract

L1 retrotransposons express proteins (ORF1p and ORF2p) that preferentially mobilize their encoding RNA in cis, but they also can mobilize Alu RNA and, more rarely, cellular mRNAs in trans. Although these RNAs differ in sequence, each ends in a 3' polyadenosine (poly(A)) tract. Here, we replace the L1 polyadenylation signal with sequences derived from a non-polyadenylated long non-coding RNA (MALAT1), which can form a stabilizing triple helix at the 3' end of an RNA. L1/MALAT RNAs accumulate in cells, lack poly(A) tails, and are translated; however, they cannot retrotranspose in cis. Remarkably, the addition of a 16 or 40 base poly(A) tract downstream of the L1/MALAT triple helix restores retrotransposition in cis. The presence of a poly(A) tract also allows ORF2p to bind and mobilize RNAs in trans. Thus, a 3' poly(A) tract is critical for the retrotransposition of sequences that comprise approximately one billion base pairs of human DNA.
Copyright © 2015 Elsevier Inc. All rights reserved.

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Year:  2015        PMID: 26585388      PMCID: PMC4671821          DOI: 10.1016/j.molcel.2015.10.012

Source DB:  PubMed          Journal:  Mol Cell        ISSN: 1097-2765            Impact factor:   17.970


  68 in total

1.  Initial sequencing and analysis of the human genome.

Authors:  E S Lander; L M Linton; B Birren; C Nusbaum; M C Zody; J Baldwin; K Devon; K Dewar; M Doyle; W FitzHugh; R Funke; D Gage; K Harris; A Heaford; J Howland; L Kann; J Lehoczky; R LeVine; P McEwan; K McKernan; J Meldrim; J P Mesirov; C Miranda; W Morris; J Naylor; C Raymond; M Rosetti; R Santos; A Sheridan; C Sougnez; Y Stange-Thomann; N Stojanovic; A Subramanian; D Wyman; J Rogers; J Sulston; R Ainscough; S Beck; D Bentley; J Burton; C Clee; N Carter; A Coulson; R Deadman; P Deloukas; A Dunham; I Dunham; R Durbin; L French; D Grafham; S Gregory; T Hubbard; S Humphray; A Hunt; M Jones; C Lloyd; A McMurray; L Matthews; S Mercer; S Milne; J C Mullikin; A Mungall; R Plumb; M Ross; R Shownkeen; S Sims; R H Waterston; R K Wilson; L W Hillier; J D McPherson; M A Marra; E R Mardis; L A Fulton; A T Chinwalla; K H Pepin; W R Gish; S L Chissoe; M C Wendl; K D Delehaunty; T L Miner; A Delehaunty; J B Kramer; L L Cook; R S Fulton; D L Johnson; P J Minx; S W Clifton; T Hawkins; E Branscomb; P Predki; P Richardson; S Wenning; T Slezak; N Doggett; J F Cheng; A Olsen; S Lucas; C Elkin; E Uberbacher; M Frazier; R A Gibbs; D M Muzny; S E Scherer; J B Bouck; E J Sodergren; K C Worley; C M Rives; J H Gorrell; M L Metzker; S L Naylor; R S Kucherlapati; D L Nelson; G M Weinstock; Y Sakaki; A Fujiyama; M Hattori; T Yada; A Toyoda; T Itoh; C Kawagoe; H Watanabe; Y Totoki; T Taylor; J Weissenbach; R Heilig; W Saurin; F Artiguenave; P Brottier; T Bruls; E Pelletier; C Robert; P Wincker; D R Smith; L Doucette-Stamm; M Rubenfield; K Weinstock; H M Lee; J Dubois; A Rosenthal; M Platzer; G Nyakatura; S Taudien; A Rump; H Yang; J Yu; J Wang; G Huang; J Gu; L Hood; L Rowen; A Madan; S Qin; R W Davis; N A Federspiel; A P Abola; M J Proctor; R M Myers; J Schmutz; M Dickson; J Grimwood; D R Cox; M V Olson; R Kaul; C Raymond; N Shimizu; K Kawasaki; S Minoshima; G A Evans; M Athanasiou; R Schultz; B A Roe; F Chen; H Pan; J Ramser; H Lehrach; R Reinhardt; W R McCombie; M de la Bastide; N Dedhia; H Blöcker; K Hornischer; G Nordsiek; R Agarwala; L Aravind; J A Bailey; A Bateman; S Batzoglou; E Birney; P Bork; D G Brown; C B Burge; L Cerutti; H C Chen; D Church; M Clamp; R R Copley; T Doerks; S R Eddy; E E Eichler; T S Furey; J Galagan; J G Gilbert; C Harmon; Y Hayashizaki; D Haussler; H Hermjakob; K Hokamp; W Jang; L S Johnson; T A Jones; S Kasif; A Kaspryzk; S Kennedy; W J Kent; P Kitts; E V Koonin; I Korf; D Kulp; D Lancet; T M Lowe; A McLysaght; T Mikkelsen; J V Moran; N Mulder; V J Pollara; C P Ponting; G Schuler; J Schultz; G Slater; A F Smit; E Stupka; J Szustakowki; D Thierry-Mieg; J Thierry-Mieg; L Wagner; J Wallis; R Wheeler; A Williams; Y I Wolf; K H Wolfe; S P Yang; R F Yeh; F Collins; M S Guyer; J Peterson; A Felsenfeld; K A Wetterstrand; A Patrinos; M J Morgan; P de Jong; J J Catanese; K Osoegawa; H Shizuya; S Choi; Y J Chen; J Szustakowki
Journal:  Nature       Date:  2001-02-15       Impact factor: 49.962

2.  DNA repair mediated by endonuclease-independent LINE-1 retrotransposition.

Authors:  Tammy A Morrish; Nicolas Gilbert; Jeremy S Myers; Bethaney J Vincent; Thomas D Stamato; Guillermo E Taccioli; Mark A Batzer; John V Moran
Journal:  Nat Genet       Date:  2002-05-13       Impact factor: 38.330

3.  LINEs mobilize SINEs in the eel through a shared 3' sequence.

Authors:  Masaki Kajikawa; Norihiro Okada
Journal:  Cell       Date:  2002-11-01       Impact factor: 41.582

4.  Retrotransposition of marked SVA elements by human L1s in cultured cells.

Authors:  Dustin C Hancks; John L Goodier; Prabhat K Mandal; Ling E Cheung; Haig H Kazazian
Journal:  Hum Mol Genet       Date:  2011-06-02       Impact factor: 6.150

5.  Human L1 retrotransposition: cis preference versus trans complementation.

Authors:  W Wei; N Gilbert; S L Ooi; J F Lawler; E M Ostertag; H H Kazazian; J D Boeke; J V Moran
Journal:  Mol Cell Biol       Date:  2001-02       Impact factor: 4.272

6.  Human L1 element target-primed reverse transcription in vitro.

Authors:  Gregory J Cost; Qinghua Feng; Alain Jacquier; Jef D Boeke
Journal:  EMBO J       Date:  2002-11-01       Impact factor: 11.598

7.  Origin and evolution of LINE-1 derived "half-L1" retrotransposons (HAL1).

Authors:  Weidong Bao; Jerzy Jurka
Journal:  Gene       Date:  2010-06-21       Impact factor: 3.688

8.  Shared protein components of SINE RNPs.

Authors:  Neva West; Astrid M Roy-Engel; Hiroaki Imataka; Nahum Sonenberg; Prescott Deininger
Journal:  J Mol Biol       Date:  2002-08-16       Impact factor: 5.469

9.  Characterization of LINE-1 ribonucleoprotein particles.

Authors:  Aurélien J Doucet; Amy E Hulme; Elodie Sahinovic; Deanna A Kulpa; John B Moldovan; Huira C Kopera; Jyoti N Athanikar; Manel Hasnaoui; Alain Bucheton; John V Moran; Nicolas Gilbert
Journal:  PLoS Genet       Date:  2010-10-07       Impact factor: 5.917

10.  LINE-1 retrotransposition activity in human genomes.

Authors:  Christine R Beck; Pamela Collier; Catriona Macfarlane; Maika Malig; Jeffrey M Kidd; Evan E Eichler; Richard M Badge; John V Moran
Journal:  Cell       Date:  2010-06-25       Impact factor: 41.582

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  52 in total

1.  Dissection of affinity captured LINE-1 macromolecular complexes.

Authors:  Martin S Taylor; Ilya Altukhov; Kelly R Molloy; Paolo Mita; Hua Jiang; Emily M Adney; Aleksandra Wudzinska; Sana Badri; Dmitry Ischenko; George Eng; Kathleen H Burns; David Fenyö; Brian T Chait; Dmitry Alexeev; Michael P Rout; Jef D Boeke; John LaCava
Journal:  Elife       Date:  2018-01-08       Impact factor: 8.140

2.  Engrailed homeoprotein blocks degeneration in adult dopaminergic neurons through LINE-1 repression.

Authors:  François-Xavier Blaudin de Thé; Hocine Rekaik; Eugenie Peze-Heidsieck; Olivia Massiani-Beaudoin; Rajiv L Joshi; Julia Fuchs; Alain Prochiantz
Journal:  EMBO J       Date:  2018-06-25       Impact factor: 11.598

3.  Multiple Transcriptional and Post-transcriptional Pathways Collaborate to Control Sense and Antisense RNAs of Tf2 Retroelements in Fission Yeast.

Authors:  Pierre-Luc Mallet; Marc Larochelle; François Bachand
Journal:  Genetics       Date:  2016-12-22       Impact factor: 4.562

4.  Poly(ADP-Ribose) Polymerase 2 Recruits Replication Protein A to Sites of LINE-1 Integration to Facilitate Retrotransposition.

Authors:  Tomoichiro Miyoshi; Takeshi Makino; John V Moran
Journal:  Mol Cell       Date:  2019-08-28       Impact factor: 17.970

5.  LINE-1 protein localization and functional dynamics during the cell cycle.

Authors:  Paolo Mita; Aleksandra Wudzinska; Xiaoji Sun; Joshua Andrade; Shruti Nayak; David J Kahler; Sana Badri; John LaCava; Beatrix Ueberheide; Chi Y Yun; David Fenyö; Jef D Boeke
Journal:  Elife       Date:  2018-01-08       Impact factor: 8.140

Review 6.  Transposable element detection from whole genome sequence data.

Authors:  Adam D Ewing
Journal:  Mob DNA       Date:  2015-12-29

7.  Uridylation by TUT4/7 Restricts Retrotransposition of Human LINE-1s.

Authors:  Zbigniew Warkocki; Paweł S Krawczyk; Dorota Adamska; Krystian Bijata; Jose L Garcia-Perez; Andrzej Dziembowski
Journal:  Cell       Date:  2018-08-16       Impact factor: 41.582

Review 8.  Transposable elements in cancer.

Authors:  Kathleen H Burns
Journal:  Nat Rev Cancer       Date:  2017-06-09       Impact factor: 60.716

9.  Mobile genetic elements: in silico, in vitro, in vivo.

Authors:  Irina R Arkhipova; Phoebe A Rice
Journal:  Mol Ecol       Date:  2016-02-15       Impact factor: 6.185

Review 10.  The role of retrotransposable elements in ageing and age-associated diseases.

Authors:  Vera Gorbunova; Andrei Seluanov; Paolo Mita; Wilson McKerrow; David Fenyö; Jef D Boeke; Sara B Linker; Fred H Gage; Jill A Kreiling; Anna P Petrashen; Trenton A Woodham; Jackson R Taylor; Stephen L Helfand; John M Sedivy
Journal:  Nature       Date:  2021-08-04       Impact factor: 49.962

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