Literature DB >> 26822117

Mobile genetic elements: in silico, in vitro, in vivo.

Irina R Arkhipova1, Phoebe A Rice2.   

Abstract

Mobile genetic elements (MGEs), also called transposable elements (TEs), represent universal components of most genomes and are intimately involved in nearly all aspects of genome organization, function and evolution. However, there is currently a gap between the fast pace of TE discovery in silico, driven by the exponential growth of comparative genomic studies, and a limited number of experimental models amenable to more traditional in vitro and in vivo studies of structural, mechanistic and regulatory properties of diverse MGEs. Experimental and computational scientists came together to bridge this gap at a recent conference, 'Mobile Genetic Elements: in silico, in vitro, in vivo', held at the Marine Biological Laboratory (MBL) in Woods Hole, MA, USA.
© 2016 John Wiley & Sons Ltd.

Entities:  

Keywords:  bioinformatics; genomics; retrotransposons; transposable elements; transposition

Mesh:

Substances:

Year:  2016        PMID: 26822117      PMCID: PMC4769670          DOI: 10.1111/mec.13543

Source DB:  PubMed          Journal:  Mol Ecol        ISSN: 0962-1083            Impact factor:   6.185


  33 in total

Review 1.  Repbase Update, a database of eukaryotic repetitive elements.

Authors:  J Jurka; V V Kapitonov; A Pavlicek; P Klonowski; O Kohany; J Walichiewicz
Journal:  Cytogenet Genome Res       Date:  2005       Impact factor: 1.636

2.  Induction of Instability at Selected Loci in Maize.

Authors:  B McClintock
Journal:  Genetics       Date:  1953-11       Impact factor: 4.562

3.  Post-translational environmental switch of RadA activity by extein-intein interactions in protein splicing.

Authors:  Natalya I Topilina; Olga Novikova; Matthew Stanger; Nilesh K Banavali; Marlene Belfort
Journal:  Nucleic Acids Res       Date:  2015-06-22       Impact factor: 16.971

4.  Cas1-Cas2 complex formation mediates spacer acquisition during CRISPR-Cas adaptive immunity.

Authors:  James K Nuñez; Philip J Kranzusch; Jonas Noeske; Addison V Wright; Christopher W Davies; Jennifer A Doudna
Journal:  Nat Struct Mol Biol       Date:  2014-05-04       Impact factor: 15.369

5.  A 3' Poly(A) Tract Is Required for LINE-1 Retrotransposition.

Authors:  Aurélien J Doucet; Jeremy E Wilusz; Tomoichiro Miyoshi; Ying Liu; John V Moran
Journal:  Mol Cell       Date:  2015-11-12       Impact factor: 17.970

6.  Genomic impact of eukaryotic transposable elements.

Authors:  Irina R Arkhipova; Mark A Batzer; Juergen Brosius; Cédric Feschotte; John V Moran; Jürgen Schmitz; Jerzy Jurka
Journal:  Mob DNA       Date:  2012-11-21

7.  The casposon-encoded Cas1 protein from Aciduliprofundum boonei is a DNA integrase that generates target site duplications.

Authors:  Alison B Hickman; Fred Dyda
Journal:  Nucleic Acids Res       Date:  2015-11-16       Impact factor: 16.971

8.  Identification of a predicted partner-switching system that affects production of the gene transfer agent RcGTA and stationary phase viability in Rhodobacter capsulatus.

Authors:  Ryan G Mercer; Andrew S Lang
Journal:  BMC Microbiol       Date:  2014-03-19       Impact factor: 3.605

9.  Casposons: a new superfamily of self-synthesizing DNA transposons at the origin of prokaryotic CRISPR-Cas immunity.

Authors:  Mart Krupovic; Kira S Makarova; Patrick Forterre; David Prangishvili; Eugene V Koonin
Journal:  BMC Biol       Date:  2014-05-19       Impact factor: 7.431

10.  Unique transposon landscapes are pervasive across Drosophila melanogaster genomes.

Authors:  Reazur Rahman; Gung-wei Chirn; Abhay Kanodia; Yuliya A Sytnikova; Björn Brembs; Casey M Bergman; Nelson C Lau
Journal:  Nucleic Acids Res       Date:  2015-11-17       Impact factor: 16.971

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