Literature DB >> 29309036

LINE-1 protein localization and functional dynamics during the cell cycle.

Paolo Mita1, Aleksandra Wudzinska1, Xiaoji Sun1, Joshua Andrade2, Shruti Nayak2, David J Kahler3, Sana Badri4, John LaCava1,5, Beatrix Ueberheide1,2, Chi Y Yun3, David Fenyö1, Jef D Boeke1.   

Abstract

LINE-1/L1 retrotransposon sequences comprise 17% of the human genome. Among the many classes of mobile genetic elements, L1 is the only autonomous retrotransposon that still drives human genomic plasticity today. Through its co-evolution with the human genome, L1 has intertwined itself with host cell biology. However, a clear understanding of L1's lifecycle and the processes involved in restricting its insertion and intragenomic spread remains elusive. Here we identify modes of L1 proteins' entrance into the nucleus, a necessary step for L1 proliferation. Using functional, biochemical, and imaging approaches, we also show a clear cell cycle bias for L1 retrotransposition that peaks during the S phase. Our observations provide a basis for novel interpretations about the nature of nuclear and cytoplasmic L1 ribonucleoproteins (RNPs) and the potential role of DNA replication in L1 retrotransposition.
© 2018, Mita et al.

Entities:  

Keywords:  LINE-1; MCM proteins; PCNA; cell biology; cell cycle; evolutionary biology; genomics; human; retrotransposition; retrotransposons; virus

Mesh:

Substances:

Year:  2018        PMID: 29309036      PMCID: PMC5821460          DOI: 10.7554/eLife.30058

Source DB:  PubMed          Journal:  Elife        ISSN: 2050-084X            Impact factor:   8.140


  90 in total

Review 1.  The unusual phylogenetic distribution of retrotransposons: a hypothesis.

Authors:  Jef D Boeke
Journal:  Genome Res       Date:  2003-09       Impact factor: 9.043

2.  Human L1 retrotransposon encodes a conserved endonuclease required for retrotransposition.

Authors:  Q Feng; J V Moran; H H Kazazian; J D Boeke
Journal:  Cell       Date:  1996-11-29       Impact factor: 41.582

3.  The dual effect of mimosine on DNA replication.

Authors:  R F Kalejta; J L Hamlin
Journal:  Exp Cell Res       Date:  1997-02-25       Impact factor: 3.905

4.  Human L1 retrotransposition: cis preference versus trans complementation.

Authors:  W Wei; N Gilbert; S L Ooi; J F Lawler; E M Ostertag; H H Kazazian; J D Boeke; J V Moran
Journal:  Mol Cell Biol       Date:  2001-02       Impact factor: 4.272

5.  Human L1 element target-primed reverse transcription in vitro.

Authors:  Gregory J Cost; Qinghua Feng; Alain Jacquier; Jef D Boeke
Journal:  EMBO J       Date:  2002-11-01       Impact factor: 11.598

6.  Aurora B-mediated abscission checkpoint protects against tetraploidization.

Authors:  Patrick Steigemann; Claudia Wurzenberger; Michael H A Schmitz; Michael Held; Julien Guizetti; Sandra Maar; Daniel W Gerlich
Journal:  Cell       Date:  2009-02-06       Impact factor: 41.582

7.  Merging high-quality biochemical fractionation with a refined flow cytometry approach to monitor nucleocytoplasmic protein expression throughout the unperturbed mammalian cell cycle.

Authors:  Margit Rosner; Katharina Schipany; Markus Hengstschläger
Journal:  Nat Protoc       Date:  2013-02-28       Impact factor: 13.491

8.  Mimosine inhibits viral DNA synthesis through ribonucleotide reductase.

Authors:  Y Dai; B Gold; J K Vishwanatha; S L Rhode
Journal:  Virology       Date:  1994-11-15       Impact factor: 3.616

9.  Visualizing spatiotemporal dynamics of multicellular cell-cycle progression.

Authors:  Asako Sakaue-Sawano; Hiroshi Kurokawa; Toshifumi Morimura; Aki Hanyu; Hiroshi Hama; Hatsuki Osawa; Saori Kashiwagi; Kiyoko Fukami; Takaki Miyata; Hiroyuki Miyoshi; Takeshi Imamura; Masaharu Ogawa; Hisao Masai; Atsushi Miyawaki
Journal:  Cell       Date:  2008-02-08       Impact factor: 41.582

10.  Expression and detection of LINE-1 ORF-encoded proteins.

Authors:  Lixin Dai; John LaCava; Martin S Taylor; Jef D Boeke
Journal:  Mob Genet Elements       Date:  2014-05-22
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  41 in total

1.  Dissection of affinity captured LINE-1 macromolecular complexes.

Authors:  Martin S Taylor; Ilya Altukhov; Kelly R Molloy; Paolo Mita; Hua Jiang; Emily M Adney; Aleksandra Wudzinska; Sana Badri; Dmitry Ischenko; George Eng; Kathleen H Burns; David Fenyö; Brian T Chait; Dmitry Alexeev; Michael P Rout; Jef D Boeke; John LaCava
Journal:  Elife       Date:  2018-01-08       Impact factor: 8.140

2.  sRNA/L1 retrotransposition: using siRNAs and miRNAs to expand the applications of the cell culture-based LINE-1 retrotransposition assay.

Authors:  Pablo Tristan-Ramos; Santiago Morell; Laura Sanchez; Belen Toledo; Jose L Garcia-Perez; Sara R Heras
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2020-02-10       Impact factor: 6.237

3.  Poly(ADP-Ribose) Polymerase 2 Recruits Replication Protein A to Sites of LINE-1 Integration to Facilitate Retrotransposition.

Authors:  Tomoichiro Miyoshi; Takeshi Makino; John V Moran
Journal:  Mol Cell       Date:  2019-08-28       Impact factor: 17.970

4.  L1EM: a tool for accurate locus specific LINE-1 RNA quantification.

Authors:  Wilson McKerrow; David Fenyö
Journal:  Bioinformatics       Date:  2020-02-15       Impact factor: 6.937

5.  Human L1 Transposition Dynamics Unraveled with Functional Data Analysis.

Authors:  Di Chen; Marzia A Cremona; Zongtai Qi; Robi D Mitra; Francesca Chiaromonte; Kateryna D Makova
Journal:  Mol Biol Evol       Date:  2020-12-16       Impact factor: 16.240

Review 6.  Melatonin: Regulation of Viral Phase Separation and Epitranscriptomics in Post-Acute Sequelae of COVID-19.

Authors:  Doris Loh; Russel J Reiter
Journal:  Int J Mol Sci       Date:  2022-07-23       Impact factor: 6.208

7.  The γδ IEL effector API5 masks genetic susceptibility to Paneth cell death.

Authors:  Yu Matsuzawa-Ishimoto; Xiaomin Yao; Akiko Koide; Beatrix M Ueberheide; Jordan E Axelrad; Bernardo S Reis; Roham Parsa; Jessica A Neil; Joseph C Devlin; Eugene Rudensky; M Zahidunnabi Dewan; Michael Cammer; Richard S Blumberg; Yi Ding; Kelly V Ruggles; Daniel Mucida; Shohei Koide; Ken Cadwell
Journal:  Nature       Date:  2022-10-05       Impact factor: 69.504

Review 8.  The Role of Transposable Elements of the Human Genome in Neuronal Function and Pathology.

Authors:  Ekaterina Chesnokova; Alexander Beletskiy; Peter Kolosov
Journal:  Int J Mol Sci       Date:  2022-05-23       Impact factor: 6.208

Review 9.  Role of long interspersed nuclear element-1 in the regulation of chromatin landscapes and genome dynamics.

Authors:  Kenneth S Ramos; Pasano Bojang; Emma Bowers
Journal:  Exp Biol Med (Maywood)       Date:  2021-07-25

Review 10.  The role of retrotransposable elements in ageing and age-associated diseases.

Authors:  Vera Gorbunova; Andrei Seluanov; Paolo Mita; Wilson McKerrow; David Fenyö; Jef D Boeke; Sara B Linker; Fred H Gage; Jill A Kreiling; Anna P Petrashen; Trenton A Woodham; Jackson R Taylor; Stephen L Helfand; John M Sedivy
Journal:  Nature       Date:  2021-08-04       Impact factor: 49.962

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