Literature DB >> 28642606

Transposable elements in cancer.

Kathleen H Burns1.   

Abstract

Transposable elements give rise to interspersed repeats, sequences that comprise most of our genomes. These mobile DNAs have been historically underappreciated - both because they have been presumed to be unimportant, and because their high copy number and variability pose unique technical challenges. Neither impediment now seems steadfast. Interest in the human mobilome has never been greater, and methods enabling its study are maturing at a fast pace. This Review describes the activity of transposable elements in human cancers, particularly long interspersed element-1 (LINE-1). LINE-1 sequences are self-propagating, protein-coding retrotransposons, and their activity results in somatically acquired insertions in cancer genomes. Altered expression of transposable elements and animation of genomic LINE-1 sequences appear to be hallmarks of cancer, and can be responsible for driving mutations in tumorigenesis.

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Year:  2017        PMID: 28642606     DOI: 10.1038/nrc.2017.35

Source DB:  PubMed          Journal:  Nat Rev Cancer        ISSN: 1474-175X            Impact factor:   60.716


  169 in total

1.  Alu-containing exons are alternatively spliced.

Authors:  Rotem Sorek; Gil Ast; Dan Graur
Journal:  Genome Res       Date:  2002-07       Impact factor: 9.043

2.  Human L1 retrotransposon encodes a conserved endonuclease required for retrotransposition.

Authors:  Q Feng; J V Moran; H H Kazazian; J D Boeke
Journal:  Cell       Date:  1996-11-29       Impact factor: 41.582

3.  Human L1 retrotransposition: cis preference versus trans complementation.

Authors:  W Wei; N Gilbert; S L Ooi; J F Lawler; E M Ostertag; H H Kazazian; J D Boeke; J V Moran
Journal:  Mol Cell Biol       Date:  2001-02       Impact factor: 4.272

4.  Human L1 element target-primed reverse transcription in vitro.

Authors:  Gregory J Cost; Qinghua Feng; Alain Jacquier; Jef D Boeke
Journal:  EMBO J       Date:  2002-11-01       Impact factor: 11.598

5.  Frequent human genomic DNA transduction driven by LINE-1 retrotransposition.

Authors:  O K Pickeral; W Makałowski; M S Boguski; J D Boeke
Journal:  Genome Res       Date:  2000-04       Impact factor: 9.043

6.  Ribonuclease and high salt sensitivity of the ribonucleoprotein complex formed by the human LINE-1 retrotransposon.

Authors:  H Hohjoh; M F Singer
Journal:  J Mol Biol       Date:  1997-08-08       Impact factor: 5.469

7.  Stable C0T-1 repeat RNA is abundant and is associated with euchromatic interphase chromosomes.

Authors:  Lisa L Hall; Dawn M Carone; Alvin V Gomez; Heather J Kolpa; Meg Byron; Nitish Mehta; Frank O Fackelmayer; Jeanne B Lawrence
Journal:  Cell       Date:  2014-02-27       Impact factor: 41.582

8.  Mutation in LDL receptor: Alu-Alu recombination deletes exons encoding transmembrane and cytoplasmic domains.

Authors:  M A Lehrman; W J Schneider; T C Südhof; M S Brown; J L Goldstein; D W Russell
Journal:  Science       Date:  1985-01-11       Impact factor: 47.728

9.  Unit-length line-1 transcripts in human teratocarcinoma cells.

Authors:  J Skowronski; T G Fanning; M F Singer
Journal:  Mol Cell Biol       Date:  1988-04       Impact factor: 4.272

10.  Sequencing, identification and mapping of primed L1 elements (SIMPLE) reveals significant variation in full length L1 elements between individuals.

Authors:  Vincent A Streva; Vallmer E Jordan; Sara Linker; Dale J Hedges; Mark A Batzer; Prescott L Deininger
Journal:  BMC Genomics       Date:  2015-03-21       Impact factor: 3.969

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  136 in total

1.  SQuIRE reveals locus-specific regulation of interspersed repeat expression.

Authors:  Wan R Yang; Daniel Ardeljan; Clarissa N Pacyna; Lindsay M Payer; Kathleen H Burns
Journal:  Nucleic Acids Res       Date:  2019-03-18       Impact factor: 16.971

2.  Multiple Invasions of Visitor, a DD41D Family of Tc1/mariner Transposons, throughout the Evolution of Vertebrates.

Authors:  Dan Shen; Bo Gao; Csaba Miskey; Cai Chen; Yatong Sang; Wencheng Zong; Saisai Wang; Yali Wang; Xiaoyan Wang; Zoltán Ivics; Chengyi Song
Journal:  Genome Biol Evol       Date:  2020-07-01       Impact factor: 3.416

3.  An atlas of transposable element-derived alternative splicing in cancer.

Authors:  Evan A Clayton; Lavanya Rishishwar; Tzu-Chuan Huang; Saurabh Gulati; Dongjo Ban; John F McDonald; I King Jordan
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2020-02-10       Impact factor: 6.237

Review 4.  Chromothripsis, a credible chromosomal mechanism in evolutionary process.

Authors:  Franck Pellestor; Vincent Gatinois
Journal:  Chromosoma       Date:  2018-08-07       Impact factor: 4.316

Review 5.  Transposable Element Mediated Innovation in Gene Regulatory Landscapes of Cells: Re-Visiting the "Gene-Battery" Model.

Authors:  Vasavi Sundaram; Ting Wang
Journal:  Bioessays       Date:  2017-12-05       Impact factor: 4.345

6.  Subfamily-specific quantification of endogenous mouse L1 retrotransposons by droplet digital PCR.

Authors:  Simon J Newkirk; Lingqi Kong; Mason M Jones; Chase E Habben; Victoria L Dilts; Ping Ye; Wenfeng An
Journal:  Anal Biochem       Date:  2020-05-20       Impact factor: 3.365

7.  LINE-1 protein localization and functional dynamics during the cell cycle.

Authors:  Paolo Mita; Aleksandra Wudzinska; Xiaoji Sun; Joshua Andrade; Shruti Nayak; David J Kahler; Sana Badri; John LaCava; Beatrix Ueberheide; Chi Y Yun; David Fenyö; Jef D Boeke
Journal:  Elife       Date:  2018-01-08       Impact factor: 8.140

8.  Long Interspersed Nuclear Element 1 Retrotransposons Become Deregulated during the Development of Ovarian Cancer Precursor Lesions.

Authors:  Thomas R Pisanic; Shiho Asaka; Shiou-Fu Lin; Ting-Tai Yen; Hanru Sun; Asli Bahadirli-Talbott; Tza-Huei Wang; Kathleen H Burns; Tian-Li Wang; Ie-Ming Shih
Journal:  Am J Pathol       Date:  2018-12-13       Impact factor: 4.307

9.  Hijacking Oogenesis Enables Massive Propagation of LINE and Retroviral Transposons.

Authors:  Lu Wang; Kun Dou; Sungjin Moon; Frederick J Tan; Zz Zhao Zhang
Journal:  Cell       Date:  2018-07-26       Impact factor: 41.582

Review 10.  Post-transcriptional regulation of LINE-1 retrotransposition by AID/APOBEC and ADAR deaminases.

Authors:  Elisa Orecchini; Loredana Frassinelli; Silvia Galardi; Silvia Anna Ciafrè; Alessandro Michienzi
Journal:  Chromosome Res       Date:  2018-02-02       Impact factor: 5.239

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