Literature DB >> 34349292

The role of retrotransposable elements in ageing and age-associated diseases.

Vera Gorbunova1,2, Andrei Seluanov1,2, Paolo Mita3,4,5, Wilson McKerrow3,4, David Fenyö3,4, Jef D Boeke3,4,6, Sara B Linker7, Fred H Gage7, Jill A Kreiling8,9, Anna P Petrashen8,9, Trenton A Woodham8,9, Jackson R Taylor8,9, Stephen L Helfand8,9, John M Sedivy10,11.   

Abstract

The genomes of virtually all organisms contain repetitive sequences that are generated by the activity of transposable elements (transposons). Transposons are mobile genetic elements that can move from one genomic location to another; in this process, they amplify and increase their presence in genomes, sometimes to very high copy numbers. In this Review we discuss new evidence and ideas that the activity of retrotransposons, a major subgroup of transposons overall, influences and even promotes the process of ageing and age-related diseases in complex metazoan organisms, including humans. Retrotransposons have been coevolving with their host genomes since the dawn of life. This relationship has been largely competitive, and transposons have earned epithets such as 'junk DNA' and 'molecular parasites'. Much of our knowledge of the evolution of retrotransposons reflects their activity in the germline and is evident from genome sequence data. Recent research has provided a wealth of information on the activity of retrotransposons in somatic tissues during an individual lifespan, the molecular mechanisms that underlie this activity, and the manner in which these processes intersect with our own physiology, health and well-being.
© 2021. The Author(s), under exclusive licence to Springer Nature Limited.

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Year:  2021        PMID: 34349292      PMCID: PMC8600649          DOI: 10.1038/s41586-021-03542-y

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  153 in total

1.  Cell divisions are required for L1 retrotransposition.

Authors:  Xi Shi; Andrei Seluanov; Vera Gorbunova
Journal:  Mol Cell Biol       Date:  2006-12-04       Impact factor: 4.272

2.  Analysis of Drosophila STING Reveals an Evolutionarily Conserved Antimicrobial Function.

Authors:  Marina Martin; Aoi Hiroyasu; R Marena Guzman; Steven A Roberts; Alan G Goodman
Journal:  Cell Rep       Date:  2018-06-19       Impact factor: 9.423

3.  The sirtuin SIRT6 regulates lifespan in male mice.

Authors:  Yariv Kanfi; Shoshana Naiman; Gail Amir; Victoria Peshti; Guy Zinman; Liat Nahum; Ziv Bar-Joseph; Haim Y Cohen
Journal:  Nature       Date:  2012-02-22       Impact factor: 49.962

Review 4.  How retrotransposons shape genome regulation.

Authors:  Paolo Mita; Jef D Boeke
Journal:  Curr Opin Genet Dev       Date:  2016-02-06       Impact factor: 5.578

5.  Primate-specific ORF0 contributes to retrotransposon-mediated diversity.

Authors:  Ahmet M Denli; Iñigo Narvaiza; Bilal E Kerman; Monique Pena; Christopher Benner; Maria C N Marchetto; Jolene K Diedrich; Aaron Aslanian; Jiao Ma; James J Moresco; Lynne Moore; Tony Hunter; Alan Saghatelian; Fred H Gage
Journal:  Cell       Date:  2015-10-22       Impact factor: 41.582

6.  Genomes of replicatively senescent cells undergo global epigenetic changes leading to gene silencing and activation of transposable elements.

Authors:  Marco De Cecco; Steven W Criscione; Edward J Peckham; Sara Hillenmeyer; Eliza A Hamm; Jayameenakshi Manivannan; Abigail L Peterson; Jill A Kreiling; Nicola Neretti; John M Sedivy
Journal:  Aging Cell       Date:  2013-01-30       Impact factor: 9.304

7.  Long interspersed nuclear element-1 hypomethylation in cancer: biology and clinical applications.

Authors:  Nakarin Kitkumthorn; Apiwat Mutirangura
Journal:  Clin Epigenetics       Date:  2011-04-10       Impact factor: 6.551

8.  RNase H2 Loss in Murine Astrocytes Results in Cellular Defects Reminiscent of Nucleic Acid-Mediated Autoinflammation.

Authors:  Kareen Bartsch; Markus Damme; Tommy Regen; Lore Becker; Lillian Garrett; Sabine M Hölter; Katharina Knittler; Christopher Borowski; Ari Waisman; Markus Glatzel; Helmut Fuchs; Valerie Gailus-Durner; Martin Hrabe de Angelis; Björn Rabe
Journal:  Front Immunol       Date:  2018-03-29       Impact factor: 7.561

9.  Tau promotes neurodegeneration through global chromatin relaxation.

Authors:  Bess Frost; Martin Hemberg; Jada Lewis; Mel B Feany
Journal:  Nat Neurosci       Date:  2014-01-26       Impact factor: 24.884

10.  Repetitive elements as a transcriptomic marker of aging: Evidence in multiple datasets and models.

Authors:  Thomas J LaRocca; Alyssa N Cavalier; Devin Wahl
Journal:  Aging Cell       Date:  2020-06-05       Impact factor: 11.005

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  23 in total

Review 1.  Cytoplasmic DNA: sources, sensing, and role in aging and disease.

Authors:  Karl N Miller; Stella G Victorelli; Hanna Salmonowicz; Nirmalya Dasgupta; Tianhui Liu; João F Passos; Peter D Adams
Journal:  Cell       Date:  2021-10-28       Impact factor: 41.582

Review 2.  DNA damage and repair in age-related inflammation.

Authors:  Yang Zhao; Matthew Simon; Andrei Seluanov; Vera Gorbunova
Journal:  Nat Rev Immunol       Date:  2022-07-13       Impact factor: 108.555

3.  Evidence that conserved essential genes are enriched for pro-longevity factors.

Authors:  Naci Oz; Elena M Vayndorf; Mitsuhiro Tsuchiya; Samantha McLean; Lesly Turcios-Hernandez; Jason N Pitt; Benjamin W Blue; Michael Muir; Michael G Kiflezghi; Alexander Tyshkovskiy; Alexander Mendenhall; Matt Kaeberlein; Alaattin Kaya
Journal:  Geroscience       Date:  2022-06-13       Impact factor: 7.581

Review 4.  IFN-Aging: Coupling Aging With Interferon Response.

Authors:  Wei Cao
Journal:  Front Aging       Date:  2022-05-02

5.  Telomeres, aging, and cancer: the big picture.

Authors:  Peter M Lansdorp
Journal:  Blood       Date:  2022-02-10       Impact factor: 25.476

Review 6.  Immunosenescence, Inflammaging, and Frailty: Role of Myeloid Cells in Age-Related Diseases.

Authors:  Augusto Bleve; Francesca Motta; Barbara Durante; Chiara Pandolfo; Carlo Selmi; Antonio Sica
Journal:  Clin Rev Allergy Immunol       Date:  2022-01-15       Impact factor: 10.817

7.  BMAL1 moonlighting as a gatekeeper for LINE1 repression and cellular senescence in primates.

Authors:  Chuqian Liang; Qiong Ke; Zunpeng Liu; Jie Ren; Weiqi Zhang; Jianli Hu; Zehua Wang; Hong Chen; Kai Xia; Xingqiang Lai; Qiaoran Wang; Kuan Yang; Wei Li; Zeming Wu; Chao Wang; Haoteng Yan; Xiaoyu Jiang; Zhejun Ji; Miyang Ma; Xiao Long; Si Wang; Huating Wang; Hao Sun; Juan Carlos Izpisua Belmonte; Jing Qu; Andy Peng Xiang; Guang-Hui Liu
Journal:  Nucleic Acids Res       Date:  2022-04-08       Impact factor: 16.971

8.  LINE-1 expression in cancer correlates with p53 mutation, copy number alteration, and S phase checkpoint.

Authors:  Wilson McKerrow; Xuya Wang; Carlos Mendez-Dorantes; Paolo Mita; Song Cao; Mark Grivainis; Li Ding; John LaCava; Kathleen H Burns; Jef D Boeke; David Fenyö
Journal:  Proc Natl Acad Sci U S A       Date:  2022-02-22       Impact factor: 12.779

Review 9.  Retrotransposons as a Source of DNA Damage in Neurodegeneration.

Authors:  Eugenie Peze-Heidsieck; Tom Bonnifet; Rania Znaidi; Camille Ravel-Godreuil; Olivia Massiani-Beaudoin; Rajiv L Joshi; Julia Fuchs
Journal:  Front Aging Neurosci       Date:  2022-01-04       Impact factor: 5.750

Review 10.  Transposable Elements: Major Players in Shaping Genomic and Evolutionary Patterns.

Authors:  Nunzia Colonna Romano; Laura Fanti
Journal:  Cells       Date:  2022-03-19       Impact factor: 6.600

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