Literature DB >> 26524492

The architecture of a eukaryotic replisome.

Jingchuan Sun1,2, Yi Shi3, Roxana E Georgescu3,4, Zuanning Yuan1,2, Brian T Chait3, Huilin Li1,2, Michael E O'Donnell3,4.   

Abstract

At the eukaryotic DNA replication fork, it is widely believed that the Cdc45-Mcm2-7-GINS (CMG) helicase is positioned in front to unwind DNA and that DNA polymerases trail behind the helicase. Here we used single-particle EM to directly image a Saccharomyces cerevisiae replisome. Contrary to expectations, the leading strand Pol ɛ is positioned ahead of CMG helicase, whereas Ctf4 and the lagging-strand polymerase (Pol) α-primase are behind the helicase. This unexpected architecture indicates that the leading-strand DNA travels a long distance before reaching Pol ɛ, first threading through the Mcm2-7 ring and then making a U-turn at the bottom and reaching Pol ɛ at the top of CMG. Our work reveals an unexpected configuration of the eukaryotic replisome, suggests possible reasons for this architecture and provides a basis for further structural and biochemical replisome studies.

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Year:  2015        PMID: 26524492      PMCID: PMC4849863          DOI: 10.1038/nsmb.3113

Source DB:  PubMed          Journal:  Nat Struct Mol Biol        ISSN: 1545-9985            Impact factor:   15.369


  58 in total

1.  DNA polymerase epsilon catalytic domains are dispensable for DNA replication, DNA repair, and cell viability.

Authors:  T Kesti; K Flick; S Keränen; J E Syväoja; C Wittenberg
Journal:  Mol Cell       Date:  1999-05       Impact factor: 17.970

2.  Idling by DNA polymerase delta maintains a ligatable nick during lagging-strand DNA replication.

Authors:  Parie Garg; Carrie M Stith; Nasim Sabouri; Erik Johansson; Peter M Burgers
Journal:  Genes Dev       Date:  2004-11-01       Impact factor: 11.361

3.  The histone fold subunits of Drosophila CHRAC facilitate nucleosome sliding through dynamic DNA interactions.

Authors:  Klaus F Hartlepp; Carlos Fernández-Tornero; Anton Eberharter; Tim Grüne; Christoph W Müller; Peter B Becker
Journal:  Mol Cell Biol       Date:  2005-11       Impact factor: 4.272

4.  Isolation of the Cdc45/Mcm2-7/GINS (CMG) complex, a candidate for the eukaryotic DNA replication fork helicase.

Authors:  Stephen E Moyer; Peter W Lewis; Michael R Botchan
Journal:  Proc Natl Acad Sci U S A       Date:  2006-06-23       Impact factor: 11.205

5.  Structure of Saccharomyces cerevisiae DNA polymerase epsilon by cryo-electron microscopy.

Authors:  Francisco J Asturias; Iris K Cheung; Nasim Sabouri; Olga Chilkova; Daniel Wepplo; Erik Johansson
Journal:  Nat Struct Mol Biol       Date:  2005-12-20       Impact factor: 15.369

6.  A Major Role of DNA Polymerase δ in Replication of Both the Leading and Lagging DNA Strands.

Authors:  Robert E Johnson; Roland Klassen; Louise Prakash; Satya Prakash
Journal:  Mol Cell       Date:  2015-07-02       Impact factor: 17.970

7.  Analysis of the essential functions of the C-terminal protein/protein interaction domain of Saccharomyces cerevisiae pol epsilon and its unexpected ability to support growth in the absence of the DNA polymerase domain.

Authors:  R Dua; D L Levy; J L Campbell
Journal:  J Biol Chem       Date:  1999-08-06       Impact factor: 5.157

8.  Interaction between human Ctf4 and the Cdc45/Mcm2-7/GINS (CMG) replicative helicase.

Authors:  Young-Hoon Kang; Andrea Farina; Vladimir P Bermudez; Inger Tappin; Fang Du; Wiebke Chemnitz Galal; Jerard Hurwitz
Journal:  Proc Natl Acad Sci U S A       Date:  2013-11-19       Impact factor: 11.205

9.  Proteomic and genomic characterization of chromatin complexes at a boundary.

Authors:  Alan J Tackett; David J Dilworth; Megan J Davey; Michael O'Donnell; John D Aitchison; Michael P Rout; Brian T Chait
Journal:  J Cell Biol       Date:  2005-04-11       Impact factor: 10.539

10.  Reconstitution of a eukaryotic replisome reveals suppression mechanisms that define leading/lagging strand operation.

Authors:  Roxana E Georgescu; Grant D Schauer; Nina Y Yao; Lance D Langston; Olga Yurieva; Dan Zhang; Jeff Finkelstein; Mike E O'Donnell
Journal:  Elife       Date:  2015-04-14       Impact factor: 8.140

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  94 in total

Review 1.  A role for the base excision repair enzyme NEIL3 in replication-dependent repair of interstrand DNA cross-links derived from psoralen and abasic sites.

Authors:  Zhiyu Yang; Maryam Imani Nejad; Jacqueline Gamboa Varela; Nathan E Price; Yinsheng Wang; Kent S Gates
Journal:  DNA Repair (Amst)       Date:  2017-02-20

2.  Bacterial and Eukaryotic Replisome Machines.

Authors:  Nina Yao; Mike O'Donnell
Journal:  JSM Biochem Mol Biol       Date:  2016-05-30

Review 3.  The Eukaryotic CMG Helicase at the Replication Fork: Emerging Architecture Reveals an Unexpected Mechanism.

Authors:  Huilin Li; Michael E O'Donnell
Journal:  Bioessays       Date:  2018-02-06       Impact factor: 4.345

4.  Acute hydroxyurea-induced replication blockade results in replisome components disengagement from nascent DNA without causing fork collapse.

Authors:  Amaia Ercilla; Sonia Feu; Sergi Aranda; Alba Llopis; Sólveig Hlín Brynjólfsdóttir; Claus Storgaard Sørensen; Luis Ignacio Toledo; Neus Agell
Journal:  Cell Mol Life Sci       Date:  2019-07-11       Impact factor: 9.261

5.  Crystal structure of the human Polϵ B-subunit in complex with the C-terminal domain of the catalytic subunit.

Authors:  Andrey G Baranovskiy; Jianyou Gu; Nigar D Babayeva; Igor Kurinov; Youri I Pavlov; Tahir H Tahirov
Journal:  J Biol Chem       Date:  2017-07-26       Impact factor: 5.157

6.  CMG-Pol epsilon dynamics suggests a mechanism for the establishment of leading-strand synthesis in the eukaryotic replisome.

Authors:  Jin Chuan Zhou; Agnieszka Janska; Panchali Goswami; Ludovic Renault; Ferdos Abid Ali; Abhay Kotecha; John F X Diffley; Alessandro Costa
Journal:  Proc Natl Acad Sci U S A       Date:  2017-04-03       Impact factor: 11.205

7.  Structure of eukaryotic CMG helicase at a replication fork and implications to replisome architecture and origin initiation.

Authors:  Roxana Georgescu; Zuanning Yuan; Lin Bai; Ruda de Luna Almeida Santos; Jingchuan Sun; Dan Zhang; Olga Yurieva; Huilin Li; Michael E O'Donnell
Journal:  Proc Natl Acad Sci U S A       Date:  2017-01-17       Impact factor: 11.205

8.  A Positive Amplification Mechanism Involving a Kinase and Replication Initiation Factor Helps Assemble the Replication Fork Helicase.

Authors:  Irina Bruck; Nalini Dhingra; Daniel L Kaplan
Journal:  J Biol Chem       Date:  2017-01-12       Impact factor: 5.157

9.  Cryo-EM structure of the replisome reveals multiple interactions coordinating DNA synthesis.

Authors:  Arkadiusz W Kulczyk; Arne Moeller; Peter Meyer; Piotr Sliz; Charles C Richardson
Journal:  Proc Natl Acad Sci U S A       Date:  2017-02-21       Impact factor: 11.205

10.  Tunability of DNA Polymerase Stability during Eukaryotic DNA Replication.

Authors:  Jacob S Lewis; Lisanne M Spenkelink; Grant D Schauer; Olga Yurieva; Stefan H Mueller; Varsha Natarajan; Gurleen Kaur; Claire Maher; Callum Kay; Michael E O'Donnell; Antoine M van Oijen
Journal:  Mol Cell       Date:  2019-11-05       Impact factor: 17.970

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