Literature DB >> 28373564

CMG-Pol epsilon dynamics suggests a mechanism for the establishment of leading-strand synthesis in the eukaryotic replisome.

Jin Chuan Zhou1, Agnieszka Janska2, Panchali Goswami1, Ludovic Renault1, Ferdos Abid Ali1, Abhay Kotecha3, John F X Diffley2, Alessandro Costa4.   

Abstract

The replisome unwinds and synthesizes DNA for genome duplication. In eukaryotes, the Cdc45-MCM-GINS (CMG) helicase and the leading-strand polymerase, Pol epsilon, form a stable assembly. The mechanism for coupling DNA unwinding with synthesis is starting to be elucidated, however the architecture and dynamics of the replication fork remain only partially understood, preventing a molecular understanding of chromosome replication. To address this issue, we conducted a systematic single-particle EM study on multiple permutations of the reconstituted CMG-Pol epsilon assembly. Pol epsilon contains two flexibly tethered lobes. The noncatalytic lobe is anchored to the motor of the helicase, whereas the polymerization domain extends toward the side of the helicase. We observe two alternate configurations of the DNA synthesis domain in the CMG-bound Pol epsilon. We propose that this conformational switch might control DNA template engagement and release, modulating replisome progression.

Keywords:  CMG helicase; DNA polymerase; DNA replication; single-particle electron microscopy

Mesh:

Substances:

Year:  2017        PMID: 28373564      PMCID: PMC5402455          DOI: 10.1073/pnas.1700530114

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  53 in total

1.  Structure of the eukaryotic MCM complex at 3.8 Å.

Authors:  Ningning Li; Yuanliang Zhai; Yixiao Zhang; Wanqiu Li; Maojun Yang; Jianlin Lei; Bik-Kwoon Tye; Ning Gao
Journal:  Nature       Date:  2015-07-29       Impact factor: 49.962

2.  Isolation of the Cdc45/Mcm2-7/GINS (CMG) complex, a candidate for the eukaryotic DNA replication fork helicase.

Authors:  Stephen E Moyer; Peter W Lewis; Michael R Botchan
Journal:  Proc Natl Acad Sci U S A       Date:  2006-06-23       Impact factor: 11.205

3.  Division of labor at the eukaryotic replication fork.

Authors:  Stephanie A Nick McElhinny; Dmitry A Gordenin; Carrie M Stith; Peter M J Burgers; Thomas A Kunkel
Journal:  Mol Cell       Date:  2008-04-25       Impact factor: 17.970

Review 4.  Evolution of replication machines.

Authors:  Nina Y Yao; Mike E O'Donnell
Journal:  Crit Rev Biochem Mol Biol       Date:  2015-12-20       Impact factor: 8.250

5.  The structure and function of MCM from archaeal M. Thermoautotrophicum.

Authors:  Ryan J Fletcher; Brooke E Bishop; Ronald P Leon; Robert A Sclafani; Craig M Ogata; Xiaojiang S Chen
Journal:  Nat Struct Biol       Date:  2003-03

6.  The architecture of a eukaryotic replisome.

Authors:  Jingchuan Sun; Yi Shi; Roxana E Georgescu; Zuanning Yuan; Brian T Chait; Huilin Li; Michael E O'Donnell
Journal:  Nat Struct Mol Biol       Date:  2015-11-02       Impact factor: 15.369

7.  CTFFIND4: Fast and accurate defocus estimation from electron micrographs.

Authors:  Alexis Rohou; Nikolaus Grigorieff
Journal:  J Struct Biol       Date:  2015-08-13       Impact factor: 2.867

8.  Archaeal MCM has separable processivity, substrate choice and helicase domains.

Authors:  Elizabeth R Barry; Adam T McGeoch; Zvi Kelman; Stephen D Bell
Journal:  Nucleic Acids Res       Date:  2007-01-26       Impact factor: 16.971

9.  Reconstitution of a eukaryotic replisome reveals suppression mechanisms that define leading/lagging strand operation.

Authors:  Roxana E Georgescu; Grant D Schauer; Nina Y Yao; Lance D Langston; Olga Yurieva; Dan Zhang; Jeff Finkelstein; Mike E O'Donnell
Journal:  Elife       Date:  2015-04-14       Impact factor: 8.140

10.  Chromatin Controls DNA Replication Origin Selection, Lagging-Strand Synthesis, and Replication Fork Rates.

Authors:  Christoph F Kurat; Joseph T P Yeeles; Harshil Patel; Anne Early; John F X Diffley
Journal:  Mol Cell       Date:  2016-12-15       Impact factor: 17.970

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  48 in total

Review 1.  The Eukaryotic CMG Helicase at the Replication Fork: Emerging Architecture Reveals an Unexpected Mechanism.

Authors:  Huilin Li; Michael E O'Donnell
Journal:  Bioessays       Date:  2018-02-06       Impact factor: 4.345

2.  Crystal structure of the human Polϵ B-subunit in complex with the C-terminal domain of the catalytic subunit.

Authors:  Andrey G Baranovskiy; Jianyou Gu; Nigar D Babayeva; Igor Kurinov; Youri I Pavlov; Tahir H Tahirov
Journal:  J Biol Chem       Date:  2017-07-26       Impact factor: 5.157

Review 3.  Arranging eukaryotic nuclear DNA polymerases for replication: Specific interactions with accessory proteins arrange Pols α, δ, and ϵ in the replisome for leading-strand and lagging-strand DNA replication.

Authors:  Thomas A Kunkel; Peter M J Burgers
Journal:  Bioessays       Date:  2017-08       Impact factor: 4.345

Review 4.  The ring-shaped hexameric helicases that function at DNA replication forks.

Authors:  Michael E O'Donnell; Huilin Li
Journal:  Nat Struct Mol Biol       Date:  2018-01-29       Impact factor: 15.369

5.  High density of unrepaired genomic ribonucleotides leads to Topoisomerase 1-mediated severe growth defects in absence of ribonucleotide reductase.

Authors:  Susana M Cerritelli; Jaime Iranzo; Sushma Sharma; Andrei Chabes; Robert J Crouch; David Tollervey; Aziz El Hage
Journal:  Nucleic Acids Res       Date:  2020-05-07       Impact factor: 16.971

6.  Iron-Sulfur Clusters in DNA Polymerases and Primases of Eukaryotes.

Authors:  Andrey G Baranovskiy; Hollie M Siebler; Youri I Pavlov; Tahir H Tahirov
Journal:  Methods Enzymol       Date:  2017-12-06       Impact factor: 1.600

7.  Superresolution imaging of chromatin fibers to visualize epigenetic information on replicative DNA.

Authors:  Yingying Li; Jonathan Snedeker; Matthew Wooten; Zehra F Nizami; Joseph G Gall; Xin Chen
Journal:  Nat Protoc       Date:  2020-02-12       Impact factor: 13.491

8.  Reconstitution of translesion synthesis reveals a mechanism of eukaryotic DNA replication restart.

Authors:  Thomas A Guilliam; Joseph T P Yeeles
Journal:  Nat Struct Mol Biol       Date:  2020-04-27       Impact factor: 15.369

9.  Synergistic Coordination of Chromatin Torsional Mechanics and Topoisomerase Activity.

Authors:  Tung T Le; Xiang Gao; Seong Ha Park; Jaeyoon Lee; James T Inman; Joyce H Lee; Jessica L Killian; Ryan P Badman; James M Berger; Michelle D Wang
Journal:  Cell       Date:  2019-10-17       Impact factor: 41.582

10.  The mechanism of eukaryotic CMG helicase activation.

Authors:  Max E Douglas; Ferdos Abid Ali; Alessandro Costa; John F X Diffley
Journal:  Nature       Date:  2018-02-28       Impact factor: 49.962

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