Literature DB >> 31704183

Tunability of DNA Polymerase Stability during Eukaryotic DNA Replication.

Jacob S Lewis1, Lisanne M Spenkelink1, Grant D Schauer2, Olga Yurieva3, Stefan H Mueller1, Varsha Natarajan1, Gurleen Kaur1, Claire Maher1, Callum Kay1, Michael E O'Donnell4, Antoine M van Oijen5.   

Abstract

Structural and biochemical studies have revealed the basic principles of how the replisome duplicates genomic DNA, but little is known about its dynamics during DNA replication. We reconstitute the 34 proteins needed to form the S. cerevisiae replisome and show how changing local concentrations of the key DNA polymerases tunes the ability of the complex to efficiently recycle these proteins or to dynamically exchange them. Particularly, we demonstrate redundancy of the Pol α-primase DNA polymerase activity in replication and show that Pol α-primase and the lagging-strand Pol δ can be re-used within the replisome to support the synthesis of large numbers of Okazaki fragments. This unexpected malleability of the replisome might allow it to deal with barriers and resource challenges during replication of large genomes.
Copyright © 2019 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  DNA; DNA replication; dynamics; fluorescence; multi-protein complexes; polymerase; replication fork; replisome; single molecule; stability

Mesh:

Substances:

Year:  2019        PMID: 31704183      PMCID: PMC6943181          DOI: 10.1016/j.molcel.2019.10.005

Source DB:  PubMed          Journal:  Mol Cell        ISSN: 1097-2765            Impact factor:   17.970


  49 in total

1.  Architecture of the replication complex and DNA loops at the fork generated by the bacteriophage t4 proteins.

Authors:  Paul D Chastain; Alexander M Makhov; Nancy G Nossal; Jack Griffith
Journal:  J Biol Chem       Date:  2003-03-20       Impact factor: 5.157

2.  Replication Fork Activation Is Enabled by a Single-Stranded DNA Gate in CMG Helicase.

Authors:  Michael R Wasserman; Grant D Schauer; Michael E O'Donnell; Shixin Liu
Journal:  Cell       Date:  2019-07-25       Impact factor: 41.582

3.  Recycling of single-stranded DNA-binding protein by the bacterial replisome.

Authors:  Lisanne M Spenkelink; Jacob S Lewis; Slobodan Jergic; Zhi-Qiang Xu; Andrew Robinson; Nicholas E Dixon; Antoine M van Oijen
Journal:  Nucleic Acids Res       Date:  2019-05-07       Impact factor: 16.971

4.  Dynamics of DNA supercoils.

Authors:  M T J van Loenhout; M V de Grunt; C Dekker
Journal:  Science       Date:  2012-09-13       Impact factor: 47.728

5.  TrackMate: An open and extensible platform for single-particle tracking.

Authors:  Jean-Yves Tinevez; Nick Perry; Johannes Schindelin; Genevieve M Hoopes; Gregory D Reynolds; Emmanuel Laplantine; Sebastian Y Bednarek; Spencer L Shorte; Kevin W Eliceiri
Journal:  Methods       Date:  2016-10-03       Impact factor: 3.608

6.  Single-Molecule DNA Polymerase Dynamics at a Bacterial Replisome in Live Cells.

Authors:  Yi Liao; Yilai Li; Jeremy W Schroeder; Lyle A Simmons; Julie S Biteen
Journal:  Biophys J       Date:  2016-12-20       Impact factor: 4.033

7.  Mechanism of asymmetric polymerase assembly at the eukaryotic replication fork.

Authors:  Roxana E Georgescu; Lance Langston; Nina Y Yao; Olga Yurieva; Dan Zhang; Jeff Finkelstein; Tani Agarwal; Mike E O'Donnell
Journal:  Nat Struct Mol Biol       Date:  2014-07-06       Impact factor: 15.369

8.  Reconstitution of a eukaryotic replisome reveals suppression mechanisms that define leading/lagging strand operation.

Authors:  Roxana E Georgescu; Grant D Schauer; Nina Y Yao; Lance D Langston; Olga Yurieva; Dan Zhang; Jeff Finkelstein; Mike E O'Donnell
Journal:  Elife       Date:  2015-04-14       Impact factor: 8.140

9.  Single-molecule visualization of fast polymerase turnover in the bacterial replisome.

Authors:  Jacob S Lewis; Lisanne M Spenkelink; Slobodan Jergic; Elizabeth A Wood; Enrico Monachino; Nicholas P Horan; Karl E Duderstadt; Michael M Cox; Andrew Robinson; Nicholas E Dixon; Antoine M van Oijen
Journal:  Elife       Date:  2017-04-22       Impact factor: 8.140

10.  Mechanism of Bidirectional Leading-Strand Synthesis Establishment at Eukaryotic DNA Replication Origins.

Authors:  Valentina Aria; Joseph T P Yeeles
Journal:  Mol Cell       Date:  2018-11-16       Impact factor: 17.970

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  24 in total

1.  Single-Molecule Fluorescence Methods to Study Protein Exchange Kinetics in Supramolecular Complexes.

Authors:  Richard R Spinks; Lisanne M Spenkelink; Antoine M van Oijen
Journal:  Methods Mol Biol       Date:  2021

2.  Mars, a molecule archive suite for reproducible analysis and reporting of single-molecule properties from bioimages.

Authors:  Nadia M Huisjes; Thomas M Retzer; Matthias J Scherr; Rohit Agarwal; Lional Rajappa; Barbara Safaric; Anita Minnen; Karl E Duderstadt
Journal:  Elife       Date:  2022-09-13       Impact factor: 8.713

3.  The Fork Protection Complex: A Regulatory Hub at the Head of the Replisome.

Authors:  Daniel B Grabarczyk
Journal:  Subcell Biochem       Date:  2022

4.  Replication stress at microsatellites causes DNA double-strand breaks and break-induced replication.

Authors:  Rujuta Yashodhan Gadgil; Eric J Romer; Caitlin C Goodman; S Dean Rider; French J Damewood; Joanna R Barthelemy; Kazuo Shin-Ya; Helmut Hanenberg; Michael Leffak
Journal:  J Biol Chem       Date:  2020-09-01       Impact factor: 5.157

5.  Compensation for the absence of the catalytically active half of DNA polymerase ε in yeast by positively selected mutations in CDC28.

Authors:  Elena I Stepchenkova; Anna S Zhuk; Jian Cui; Elena R Tarakhovskaya; Stephanie R Barbari; Polina V Shcherbakova; Dmitrii E Polev; Roman Fedorov; Eugenia Poliakov; Igor B Rogozin; Artem G Lada; Youri I Pavlov
Journal:  Genetics       Date:  2021-06-24       Impact factor: 4.562

6.  Overexpression of oncogenic H-Ras in hTERT-immortalized and SV40-transformed human cells targets replicative and specialized DNA polymerases for depletion.

Authors:  Wei-Chung Tsao; Raquel Buj; Katherine M Aird; Julia M Sidorova; Kristin A Eckert
Journal:  PLoS One       Date:  2021-05-07       Impact factor: 3.240

7.  Multiple roles of Pol epsilon in eukaryotic chromosome replication.

Authors:  Milos A Cvetkovic; Esther Ortega; Roberto Bellelli; Alessandro Costa
Journal:  Biochem Soc Trans       Date:  2022-02-28       Impact factor: 4.919

Review 8.  Caught in the act: structural dynamics of replication origin activation and fork progression.

Authors:  Jacob S Lewis; Alessandro Costa
Journal:  Biochem Soc Trans       Date:  2020-06-30       Impact factor: 5.407

9.  PCNA Monoubiquitination Is Regulated by Diffusion of Rad6/Rad18 Complexes along RPA Filaments.

Authors:  Mingjie Li; Bhaswati Sengupta; Stephen J Benkovic; Tae Hee Lee; Mark Hedglin
Journal:  Biochemistry       Date:  2020-11-27       Impact factor: 3.162

Review 10.  Mechanisms for Maintaining Eukaryotic Replisome Progression in the Presence of DNA Damage.

Authors:  Thomas A Guilliam
Journal:  Front Mol Biosci       Date:  2021-07-06
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