Literature DB >> 26492006

Shaping quaternary assemblies of water-soluble non-peptide helical foldamers by sequence manipulation.

Gavin W Collie1,2, Karolina Pulka-Ziach1,2, Caterina M Lombardo1,2, Juliette Fremaux1,2, Frédéric Rosu3, Marion Decossas2,4, Laura Mauran1,2,5, Olivier Lambert2,4, Valérie Gabelica6,7, Cameron D Mackereth6,7, Gilles Guichard1,2.   

Abstract

The design and construction of biomimetic self-assembling systems is a challenging yet potentially highly rewarding endeavour that contributes to the development of new biomaterials, catalysts, drug-delivery systems and tools for the manipulation of biological processes. Significant progress has been achieved by engineering self-assembling DNA-, protein- and peptide-based building units. However, the design of entirely new, completely non-natural folded architectures that resemble biopolymers ('foldamers') and have the ability to self-assemble into atomically precise nanostructures in aqueous conditions has proved exceptionally challenging. Here we report the modular design, formation and structural elucidation at the atomic level of a series of diverse quaternary arrangements formed by the self-assembly of short amphiphilic α-helicomimetic foldamers that bear proteinaceous side chains. We show that the final quaternary assembly can be controlled at the sequence level, which permits the programmed formation of either discrete helical bundles that contain isolated cavities or pH-responsive water-filled channels with controllable pore diameters.

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Year:  2015        PMID: 26492006     DOI: 10.1038/nchem.2353

Source DB:  PubMed          Journal:  Nat Chem        ISSN: 1755-4330            Impact factor:   24.427


  47 in total

1.  Structure of a 16-nm cage designed by using protein oligomers.

Authors:  Yen-Ting Lai; Duilio Cascio; Todd O Yeates
Journal:  Science       Date:  2012-06-01       Impact factor: 47.728

2.  Helix bundle quaternary structure from alpha/beta-peptide foldamers.

Authors:  W Seth Horne; Joshua L Price; James L Keck; Samuel H Gellman
Journal:  J Am Chem Soc       Date:  2007-03-16       Impact factor: 15.419

Review 3.  Principles for designing ordered protein assemblies.

Authors:  Yen-Ting Lai; Neil P King; Todd O Yeates
Journal:  Trends Cell Biol       Date:  2012-09-10       Impact factor: 20.808

4.  Design and high-resolution structure of a β³-peptide bundle catalyst.

Authors:  Pam S P Wang; Jennifer B Nguyen; Alanna Schepartz
Journal:  J Am Chem Soc       Date:  2014-05-06       Impact factor: 15.419

5.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

6.  Designing a functional type 2 copper center that has nitrite reductase activity within α-helical coiled coils.

Authors:  Matteo Tegoni; Fangting Yu; Manuela Bersellini; James E Penner-Hahn; Vincent L Pecoraro
Journal:  Proc Natl Acad Sci U S A       Date:  2012-12-10       Impact factor: 11.205

7.  Features and development of Coot.

Authors:  P Emsley; B Lohkamp; W G Scott; K Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

8.  Synthetic amphiphilic peptide models for protein ion channels.

Authors:  J D Lear; Z R Wasserman; W F DeGrado
Journal:  Science       Date:  1988-05-27       Impact factor: 47.728

9.  An alpha/beta-peptide helix bundle with a pure beta3-amino acid core and a distinctive quaternary structure.

Authors:  Michael W Giuliano; W Seth Horne; Samuel H Gellman
Journal:  J Am Chem Soc       Date:  2009-07-29       Impact factor: 15.419

10.  Self-assembling cages from coiled-coil peptide modules.

Authors:  Jordan M Fletcher; Robert L Harniman; Frederick R H Barnes; Aimee L Boyle; Andrew Collins; Judith Mantell; Thomas H Sharp; Massimo Antognozzi; Paula J Booth; Noah Linden; Mervyn J Miles; Richard B Sessions; Paul Verkade; Derek N Woolfson
Journal:  Science       Date:  2013-04-11       Impact factor: 47.728

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  28 in total

1.  Foldamers: Biomimetic and built to order.

Authors:  W Seth Horne
Journal:  Nat Chem       Date:  2015-11       Impact factor: 24.427

2.  Heterogeneous-Backbone Foldamer Mimics of Zinc Finger Tertiary Structure.

Authors:  Kelly L George; W Seth Horne
Journal:  J Am Chem Soc       Date:  2017-06-05       Impact factor: 15.419

Review 3.  Proteomimetics as protein-inspired scaffolds with defined tertiary folding patterns.

Authors:  W Seth Horne; Tom N Grossmann
Journal:  Nat Chem       Date:  2020-02-06       Impact factor: 24.427

Review 4.  The Diverse World of Foldamers: Endless Possibilities of Self-Assembly.

Authors:  Samuele Rinaldi
Journal:  Molecules       Date:  2020-07-18       Impact factor: 4.411

5.  Designing cooperatively folded abiotic uni- and multimolecular helix bundles.

Authors:  Soumen De; Bo Chi; Thierry Granier; Ting Qi; Victor Maurizot; Ivan Huc
Journal:  Nat Chem       Date:  2017-09-18       Impact factor: 24.427

6.  Foldamer Tertiary Structure through Sequence-Guided Protein Backbone Alteration.

Authors:  Kelly L George; W Seth Horne
Journal:  Acc Chem Res       Date:  2018-04-19       Impact factor: 22.384

7.  Comparison of design strategies for α-helix backbone modification in a protein tertiary fold.

Authors:  Nathan A Tavenor; Zachary E Reinert; George A Lengyel; Brian D Griffith; W Seth Horne
Journal:  Chem Commun (Camb)       Date:  2016-03-07       Impact factor: 6.222

8.  Inhibition of β-catenin/B cell lymphoma 9 protein-protein interaction using α-helix-mimicking sulfono-γ-AApeptide inhibitors.

Authors:  Peng Sang; Min Zhang; Yan Shi; Chunpu Li; Sami Abdulkadir; Qi Li; Haitao Ji; Jianfeng Cai
Journal:  Proc Natl Acad Sci U S A       Date:  2019-05-14       Impact factor: 11.205

9.  Exploring the Functional Consequences of Protein Backbone Alteration in Ubiquitin through Native Chemical Ligation.

Authors:  Halina M Werner; Samuel K Estabrooks; G Michael Preston; Jeffrey L Brodsky; W Seth Horne
Journal:  Chembiochem       Date:  2019-08-23       Impact factor: 3.164

10.  Synthesis and Self-Assembly of Bundle-Forming α-Helical Peptide-Dendron Hybrids.

Authors:  Jeannette E Marine; Shuang Song; Xiaoli Liang; Jonathan G Rudick
Journal:  Biomacromolecules       Date:  2015-12-23       Impact factor: 6.988

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