Literature DB >> 32029906

Proteomimetics as protein-inspired scaffolds with defined tertiary folding patterns.

W Seth Horne1, Tom N Grossmann2.   

Abstract

Proteins have evolved as a variable platform that provides access to molecules with diverse shapes, sizes and functions. These features have inspired chemists for decades to seek artificial mimetics of proteins with improved or novel properties. Such work has focused primarily on small protein fragments, often isolated secondary structures; however, there has lately been a growing interest in the design of artificial molecules that mimic larger, more complex tertiary folds. In this Perspective, we define these agents as 'proteomimetics' and discuss the recent advances in the field. Proteomimetics can be divided into three categories: protein domains with side-chain functionality that alters the native linear-chain topology; protein domains in which the chemical composition of the polypeptide backbone has been partially altered; and protein-like folded architectures that are composed entirely of non-natural monomer units. We give an overview of these proteomimetic approaches and outline remaining challenges facing the field.

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Year:  2020        PMID: 32029906      PMCID: PMC7739441          DOI: 10.1038/s41557-020-0420-9

Source DB:  PubMed          Journal:  Nat Chem        ISSN: 1755-4330            Impact factor:   24.427


  73 in total

1.  Toward proteomimetics: terphenyl derivatives as structural and functional mimics of extended regions of an alpha-helix.

Authors:  B P Orner; J T Ernst; A D Hamilton
Journal:  J Am Chem Soc       Date:  2001-06-06       Impact factor: 15.419

2.  A TPX2 Proteomimetic Has Enhanced Affinity for Aurora-A Due to Hydrocarbon Stapling of a Helix.

Authors:  Yana K Rennie; Patrick J McIntyre; Tito Akindele; Richard Bayliss; Andrew G Jamieson
Journal:  ACS Chem Biol       Date:  2016-11-01       Impact factor: 5.100

Review 3.  Novel protein science enabled by total chemical synthesis.

Authors:  Stephen B H Kent
Journal:  Protein Sci       Date:  2018-12-18       Impact factor: 6.725

Review 4.  Inhibition of α-helix-mediated protein-protein interactions using designed molecules.

Authors:  Valeria Azzarito; Kérya Long; Natasha S Murphy; Andrew J Wilson
Journal:  Nat Chem       Date:  2013-03       Impact factor: 24.427

Review 5.  Small molecules, big targets: drug discovery faces the protein-protein interaction challenge.

Authors:  Duncan E Scott; Andrew R Bayly; Chris Abell; John Skidmore
Journal:  Nat Rev Drug Discov       Date:  2016-04-11       Impact factor: 84.694

Review 6.  The coming of age of de novo protein design.

Authors:  Po-Ssu Huang; Scott E Boyken; David Baker
Journal:  Nature       Date:  2016-09-15       Impact factor: 49.962

7.  How does a protein fold?

Authors:  A Sali; E Shakhnovich; M Karplus
Journal:  Nature       Date:  1994-05-19       Impact factor: 49.962

Review 8.  Protein disulfide engineering.

Authors:  Alan A Dombkowski; Kazi Zakia Sultana; Douglas B Craig
Journal:  FEBS Lett       Date:  2013-11-26       Impact factor: 4.124

Review 9.  The design of drugs for HIV and HCV.

Authors:  Erik De Clercq
Journal:  Nat Rev Drug Discov       Date:  2007-12       Impact factor: 84.694

Review 10.  Expanding and reprogramming the genetic code.

Authors:  Jason W Chin
Journal:  Nature       Date:  2017-10-04       Impact factor: 49.962

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  22 in total

1.  Proteomimetic Zinc Finger Domains with Modified Metal-binding β-Turns.

Authors:  Shilpa R Rao; W Seth Horne
Journal:  Pept Sci (Hoboken)       Date:  2020-06-07

2.  A twist in the road less traveled: The AMBER ff15ipq-m force field for protein mimetics.

Authors:  Anthony T Bogetti; Hannah E Piston; Jeremy M G Leung; Chino C Cabalteja; Darian T Yang; Alex J DeGrave; Karl T Debiec; David S Cerutti; David A Case; W Seth Horne; Lillian T Chong
Journal:  J Chem Phys       Date:  2020-08-14       Impact factor: 3.488

Review 3.  Analysis of folded structure and folding thermodynamics in heterogeneous-backbone proteomimetics.

Authors:  Jacqueline R Santhouse; Shilpa R Rao; W Seth Horne
Journal:  Methods Enzymol       Date:  2021-05-03       Impact factor: 1.600

4.  Backbone Modifications of HLA-A2-Restricted Antigens Induce Diverse Binding and T Cell Activation Outcomes.

Authors:  Ruslan Gibadullin; Caleb J Randall; John Sidney; Alessandro Sette; Samuel H Gellman
Journal:  J Am Chem Soc       Date:  2021-04-21       Impact factor: 15.419

5.  A Sos proteomimetic as a pan-Ras inhibitor.

Authors:  Seong Ho Hong; Daniel Y Yoo; Louis Conway; Khyle C Richards-Corke; Christopher G Parker; Paramjit S Arora
Journal:  Proc Natl Acad Sci U S A       Date:  2021-05-04       Impact factor: 11.205

6.  Discovery of cellular substrates of human RNA-decapping enzyme DCP2 using a stapled bicyclic peptide inhibitor.

Authors:  Yang Luo; Jeremy A Schofield; Zhenkun Na; Tanja Hann; Matthew D Simon; Sarah A Slavoff
Journal:  Cell Chem Biol       Date:  2020-12-22       Impact factor: 8.116

Review 7.  Metal-Binding Foldamers.

Authors:  Shilpa R Rao; Shelby L Schettler; W Seth Horne
Journal:  Chempluschem       Date:  2021-01       Impact factor: 2.863

8.  Proteomimetic surface fragments distinguish targets by function.

Authors:  Attila Tököli; Beáta Mag; Éva Bartus; Edit Wéber; Gerda Szakonyi; Márton A Simon; Ágnes Czibula; Éva Monostori; László Nyitray; Tamás A Martinek
Journal:  Chem Sci       Date:  2020-09-10       Impact factor: 9.825

9.  Effects of turn-structure on folding and entanglement in artificial molecular overhand knots.

Authors:  Yiwei Song; Fredrik Schaufelberger; Zoe Ashbridge; Lucian Pirvu; Iñigo J Vitorica-Yrezabal; David A Leigh
Journal:  Chem Sci       Date:  2020-12-08       Impact factor: 9.825

10.  Playing with the weakest supramolecular interactions in a 3D crystalline hexakis[60]fullerene induces control over hydrogenation selectivity.

Authors:  Estefania Fernandez-Bartolome; Arturo Gamonal; José Santos; Saeed Khodabakhshi; Eider Rodríguez-Sánchez; E Carolina Sañudo; Nazario Martín; José Sánchez Costa
Journal:  Chem Sci       Date:  2021-05-18       Impact factor: 9.825

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