Literature DB >> 29256508

Designing cooperatively folded abiotic uni- and multimolecular helix bundles.

Soumen De1, Bo Chi1, Thierry Granier1, Ting Qi1, Victor Maurizot1, Ivan Huc1.   

Abstract

Abiotic foldamers, that is foldamers that have backbones chemically remote from peptidic and nucleotidic skeletons, may give access to shapes and functions different to those of peptides and nucleotides. However, design methodologies towards abiotic tertiary and quaternary structures are yet to be developed. Here we report rationally designed interactional patterns to guide the folding and assembly of abiotic helix bundles. Computational design facilitated the introduction of hydrogen-bonding functionalities at defined locations on the aromatic amide backbones that promote cooperative folding into helix-turn-helix motifs in organic solvents. The hydrogen-bond-directed aggregation of helices not linked by a turn unit produced several thermodynamically and kinetically stable homochiral dimeric and trimeric bundles with structures that are distinct from the designed helix-turn-helix. Relative helix orientation within the bundles may be changed from parallel to tilted on subtle solvent variations. Altogether, these results prefigure the richness and uniqueness of abiotic tertiary structure behaviour.

Entities:  

Year:  2017        PMID: 29256508     DOI: 10.1038/nchem.2854

Source DB:  PubMed          Journal:  Nat Chem        ISSN: 1755-4330            Impact factor:   24.427


  41 in total

1.  Helix bundle quaternary structure from alpha/beta-peptide foldamers.

Authors:  W Seth Horne; Joshua L Price; James L Keck; Samuel H Gellman
Journal:  J Am Chem Soc       Date:  2007-03-16       Impact factor: 15.419

2.  Engineering a monomeric miniature protein.

Authors:  Abby M Hodges; Alanna Schepartz
Journal:  J Am Chem Soc       Date:  2007-08-18       Impact factor: 15.419

Review 3.  The supramolecular chemistry of β-sheets.

Authors:  Pin-Nan Cheng; Johnny D Pham; James S Nowick
Journal:  J Am Chem Soc       Date:  2013-04-02       Impact factor: 15.419

4.  Relative helix-helix conformations in branched aromatic oligoamide foldamers.

Authors:  Nicolas Delsuc; Stéphane Massip; Jean-Michel Léger; Brice Kauffmann; Ivan Huc
Journal:  J Am Chem Soc       Date:  2011-02-09       Impact factor: 15.419

5.  Nanosized hybrid oligoamide foldamers: aromatic templates for the folding of multiple aliphatic units.

Authors:  David Sánchez-García; Brice Kauffmann; Takahiro Kawanami; Hirotaka Ihara; Makoto Takafuji; Marie-Hélène Delville; Ivan Huc
Journal:  J Am Chem Soc       Date:  2009-06-24       Impact factor: 15.419

Review 6.  Protein folding and de novo protein design for biotechnological applications.

Authors:  George A Khoury; James Smadbeck; Chris A Kieslich; Christodoulos A Floudas
Journal:  Trends Biotechnol       Date:  2013-11-19       Impact factor: 19.536

7.  Protein-like tertiary folding behavior from heterogeneous backbones.

Authors:  Zachary E Reinert; George A Lengyel; W Seth Horne
Journal:  J Am Chem Soc       Date:  2013-08-15       Impact factor: 15.419

8.  A general computational approach for repeat protein design.

Authors:  Fabio Parmeggiani; Po-Ssu Huang; Sergey Vorobiev; Rong Xiao; Keunwan Park; Silvia Caprari; Min Su; Jayaraman Seetharaman; Lei Mao; Haleema Janjua; Gaetano T Montelione; John Hunt; David Baker
Journal:  J Mol Biol       Date:  2014-11-14       Impact factor: 5.469

9.  Translation of rod-like template sequences into homochiral assemblies of stacked helical oligomers.

Authors:  Quan Gan; Xiang Wang; Brice Kauffmann; Frédéric Rosu; Yann Ferrand; Ivan Huc
Journal:  Nat Nanotechnol       Date:  2017-03-13       Impact factor: 39.213

10.  De novo design of a four-fold symmetric TIM-barrel protein with atomic-level accuracy.

Authors:  Po-Ssu Huang; Kaspar Feldmeier; Fabio Parmeggiani; D Alejandro Fernandez Velasco; Birte Höcker; David Baker
Journal:  Nat Chem Biol       Date:  2015-11-23       Impact factor: 15.040

View more
  13 in total

Review 1.  Proteomimetics as protein-inspired scaffolds with defined tertiary folding patterns.

Authors:  W Seth Horne; Tom N Grossmann
Journal:  Nat Chem       Date:  2020-02-06       Impact factor: 24.427

Review 2.  The Diverse World of Foldamers: Endless Possibilities of Self-Assembly.

Authors:  Samuele Rinaldi
Journal:  Molecules       Date:  2020-07-18       Impact factor: 4.411

Review 3.  Helical Anion Foldamers in Solution.

Authors:  Eric A John; Casey J Massena; Orion B Berryman
Journal:  Chem Rev       Date:  2020-02-10       Impact factor: 60.622

4.  A versatile living polymerization method for aromatic amides.

Authors:  Subhajit Pal; Dinh Phuong Trinh Nguyen; Angélique Molliet; Mahshid Alizadeh; Aurélien Crochet; Roberto D Ortuso; Alke Petri-Fink; Andreas F M Kilbinger
Journal:  Nat Chem       Date:  2021-06-08       Impact factor: 24.427

Review 5.  Analysis of folded structure and folding thermodynamics in heterogeneous-backbone proteomimetics.

Authors:  Jacqueline R Santhouse; Shilpa R Rao; W Seth Horne
Journal:  Methods Enzymol       Date:  2021-05-03       Impact factor: 1.600

6.  Hierarchical communication of chirality for aromatic oligoamide sequences.

Authors:  Jiajia Zhang; Dan Luo; Chunmiao Ma; Lu Huang; Quan Gan
Journal:  Nat Commun       Date:  2021-05-11       Impact factor: 14.919

7.  Complex Molecules That Fold Like Proteins Can Emerge Spontaneously.

Authors:  Bin Liu; Charalampos G Pappas; Ennio Zangrando; Nicola Demitri; Piotr J Chmielewski; Sijbren Otto
Journal:  J Am Chem Soc       Date:  2019-01-16       Impact factor: 15.419

8.  Effects of turn-structure on folding and entanglement in artificial molecular overhand knots.

Authors:  Yiwei Song; Fredrik Schaufelberger; Zoe Ashbridge; Lucian Pirvu; Iñigo J Vitorica-Yrezabal; David A Leigh
Journal:  Chem Sci       Date:  2020-12-08       Impact factor: 9.825

9.  Self-folding of supramolecular polymers into bioinspired topology.

Authors:  Deepak D Prabhu; Keisuke Aratsu; Yuichi Kitamoto; Hayato Ouchi; Tomonori Ohba; Martin J Hollamby; Nobutaka Shimizu; Hideaki Takagi; Rie Haruki; Shin-Ichi Adachi; Shiki Yagai
Journal:  Sci Adv       Date:  2018-09-07       Impact factor: 14.136

10.  Interplay of secondary and tertiary folding in abiotic foldamers.

Authors:  Daniela Mazzier; Soumen De; Barbara Wicher; Victor Maurizot; Ivan Huc
Journal:  Chem Sci       Date:  2019-06-10       Impact factor: 9.825

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.