Literature DB >> 19580264

An alpha/beta-peptide helix bundle with a pure beta3-amino acid core and a distinctive quaternary structure.

Michael W Giuliano1, W Seth Horne, Samuel H Gellman.   

Abstract

Helix bundles are among the most widely studied tertiary and quaternary structural motifs in proteins. Here we present the crystal structure of an alpha/beta-peptide foldamer that adopts a tetrameric helix-bundle quaternary structure with a hydrophobic core composed solely of beta-amino acids. The structure displays features that are unprecedented among all known helix bundles composed of either alpha-peptides or peptidic foldamers. The tetramer is characterized by an asymmetry of interaction between neighboring helices, and the side-chain packing within the hydrophobic core differs fundamentally from the knobs-into-holes arrangement typical of most helix bundles.

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Year:  2009        PMID: 19580264      PMCID: PMC2724756          DOI: 10.1021/ja8099294

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  21 in total

1.  The Calpha ---H...O hydrogen bond: a determinant of stability and specificity in transmembrane helix interactions.

Authors:  A Senes; I Ubarretxena-Belandia; D M Engelman
Journal:  Proc Natl Acad Sci U S A       Date:  2001-07-31       Impact factor: 11.205

Review 2.  The structure of alpha-helical coiled coils.

Authors:  Andrei N Lupas; Markus Gruber
Journal:  Adv Protein Chem       Date:  2005

3.  Selective protein-protein interactions driven by a phenylalanine interface.

Authors:  Nicholas C Yoder; Krishna Kumar
Journal:  J Am Chem Soc       Date:  2006-01-11       Impact factor: 15.419

4.  Coiled coils at the edge of configurational heterogeneity. Structural analyses of parallel and antiparallel homotetrameric coiled coils reveal configurational sensitivity to a single solvent-exposed amino acid substitution.

Authors:  Maneesh K Yadav; Luke J Leman; Daniel J Price; Charles L Brooks; C David Stout; M Reza Ghadiri
Journal:  Biochemistry       Date:  2006-04-11       Impact factor: 3.162

5.  Helix bundle quaternary structure from alpha/beta-peptide foldamers.

Authors:  W Seth Horne; Joshua L Price; James L Keck; Samuel H Gellman
Journal:  J Am Chem Soc       Date:  2007-03-16       Impact factor: 15.419

6.  Discrete heterogeneous quaternary structure formed by alpha/beta-peptide foldamers and alpha-peptides.

Authors:  Joshua L Price; W Seth Horne; Samuel H Gellman
Journal:  J Am Chem Soc       Date:  2007-04-28       Impact factor: 15.419

Review 7.  Structural specificity in coiled-coil interactions.

Authors:  Gevorg Grigoryan; Amy E Keating
Journal:  Curr Opin Struct Biol       Date:  2008-06-12       Impact factor: 6.809

8.  Interplay among side chain sequence, backbone composition, and residue rigidification in polypeptide folding and assembly.

Authors:  W Seth Horne; Joshua L Price; Samuel H Gellman
Journal:  Proc Natl Acad Sci U S A       Date:  2008-06-27       Impact factor: 11.205

9.  A switch between two-, three-, and four-stranded coiled coils in GCN4 leucine zipper mutants.

Authors:  P B Harbury; T Zhang; P S Kim; T Alber
Journal:  Science       Date:  1993-11-26       Impact factor: 47.728

10.  Toward beta-amino acid proteins: design, synthesis, and characterization of a fifteen kilodalton beta-peptide tetramer.

Authors:  E James Petersson; Alanna Schepartz
Journal:  J Am Chem Soc       Date:  2008-01-01       Impact factor: 15.419

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  13 in total

1.  Shaping quaternary assemblies of water-soluble non-peptide helical foldamers by sequence manipulation.

Authors:  Gavin W Collie; Karolina Pulka-Ziach; Caterina M Lombardo; Juliette Fremaux; Frédéric Rosu; Marion Decossas; Laura Mauran; Olivier Lambert; Valérie Gabelica; Cameron D Mackereth; Gilles Guichard
Journal:  Nat Chem       Date:  2015-09-28       Impact factor: 24.427

Review 2.  The Diverse World of Foldamers: Endless Possibilities of Self-Assembly.

Authors:  Samuele Rinaldi
Journal:  Molecules       Date:  2020-07-18       Impact factor: 4.411

3.  Receptor selectivity from minimal backbone modification of a polypeptide agonist.

Authors:  Shi Liu; Ross W Cheloha; Tomoyuki Watanabe; Thomas J Gardella; Samuel H Gellman
Journal:  Proc Natl Acad Sci U S A       Date:  2018-11-15       Impact factor: 11.205

4.  Structural basis of Bcl-xL recognition by a BH3-mimetic α/β-peptide generated by sequence-based design.

Authors:  Erinna F Lee; Brian J Smith; W Seth Horne; Kelsey N Mayer; Marco Evangelista; Peter M Colman; Samuel H Gellman; W Douglas Fairlie
Journal:  Chembiochem       Date:  2011-07-08       Impact factor: 3.164

5.  Evaluation of diverse α/β-backbone patterns for functional α-helix mimicry: analogues of the Bim BH3 domain.

Authors:  Melissa D Boersma; Holly S Haase; Kimberly J Peterson-Kaufman; Erinna F Lee; Oliver B Clarke; Peter M Colman; Brian J Smith; W Seth Horne; W Douglas Fairlie; Samuel H Gellman
Journal:  J Am Chem Soc       Date:  2011-12-08       Impact factor: 15.419

6.  Computational design of a self-assembling β-peptide oligomer.

Authors:  Ivan V Korendovych; Yong Ho Kim; Andrew H Ryan; James D Lear; William F Degrado; Scott J Shandler
Journal:  Org Lett       Date:  2010-10-14       Impact factor: 6.005

7.  Structural consequences of beta-amino acid preorganization in a self-assembling alpha/beta-peptide: fundamental studies of foldameric helix bundles.

Authors:  Joshua L Price; W Seth Horne; Samuel H Gellman
Journal:  J Am Chem Soc       Date:  2010-09-08       Impact factor: 15.419

Review 8.  Analysis of folded structure and folding thermodynamics in heterogeneous-backbone proteomimetics.

Authors:  Jacqueline R Santhouse; Shilpa R Rao; W Seth Horne
Journal:  Methods Enzymol       Date:  2021-05-03       Impact factor: 1.600

9.  De novo design of self-assembling foldamers that inhibit heparin-protein interactions.

Authors:  Geronda L Montalvo; Yao Zhang; Trevor M Young; Michael J Costanzo; Katie B Freeman; Jun Wang; Dylan J Clements; Emma Magavern; Robert W Kavash; Richard W Scott; Dahui Liu; William F Degrado
Journal:  ACS Chem Biol       Date:  2014-02-11       Impact factor: 5.100

10.  Surfactant-facilitated crystallisation of water-soluble foldamers.

Authors:  G W Collie; K Pulka-Ziach; G Guichard
Journal:  Chem Sci       Date:  2016-02-10       Impact factor: 9.825

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