Literature DB >> 26352026

The energetics of a three-state protein folding system probed by high-pressure relaxation dispersion NMR spectroscopy.

Vitali Tugarinov1, David S Libich2, Virginia Meyer2, Julien Roche2, G Marius Clore3.   

Abstract

The energetic and volumetric properties of a three-state protein folding system, comprising a metastable triple mutant of the Fyn SH3 domain, have been investigated using pressure-dependent (15) N-relaxation dispersion NMR from 1 to 2500 bar. Changes in partial molar volumes (ΔV) and isothermal compressibilities (ΔκT ) between all the states along the folding pathway have been determined to reasonable accuracy. The partial volume and isothermal compressibility of the folded state are 100 mL mol(-1) and 40 μL mol(-1)  bar(-1) , respectively, higher than those of the unfolded ensemble. Of particular interest are the findings related to the energetic and volumetric properties of the on-pathway folding intermediate. While the latter is energetically close to the unfolded state, its volumetric properties are similar to those of the folded protein. The compressibility of the intermediate is larger than that of the folded state reflecting the less rigid nature of the former relative to the latter.
© 2015 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  high-pressure NMR spectroscopy; kinetics; protein folding; proteins; relaxation dispersion

Mesh:

Substances:

Year:  2015        PMID: 26352026      PMCID: PMC4692720          DOI: 10.1002/anie.201505416

Source DB:  PubMed          Journal:  Angew Chem Int Ed Engl        ISSN: 1433-7851            Impact factor:   15.336


  25 in total

Review 1.  Compressibility of protein transitions.

Authors:  Nicolas Taulier; Tigran V Chalikian
Journal:  Biochim Biophys Acta       Date:  2002-03-25

2.  Cavities determine the pressure unfolding of proteins.

Authors:  Julien Roche; Jose A Caro; Douglas R Norberto; Philippe Barthe; Christian Roumestand; Jamie L Schlessman; Angel E Garcia; Bertrand E García-Moreno; Catherine A Royer
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-10       Impact factor: 11.205

3.  Hydration and packing along the folding pathway of SH3 domains by pressure-dependent NMR.

Authors:  Irina Bezsonova; Dmitry M Korzhnev; R Scott Prosser; Julie D Forman-Kay; Lewis E Kay
Journal:  Biochemistry       Date:  2006-04-18       Impact factor: 3.162

4.  Nuclear magnetic resonance at high pressure.

Authors:  J Jonas
Journal:  Science       Date:  1982-06-11       Impact factor: 47.728

5.  Pulsed pressure perturbations, an extra dimension in NMR spectroscopy of proteins.

Authors:  Werner Kremer; Martin Arnold; Claudia Elisabeth Munte; Rainer Hartl; Markus Beck Erlach; Joerg Koehler; Alexander Meier; Hans Robert Kalbitzer
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6.  Diffusion-limited contact formation in unfolded cytochrome c: estimating the maximum rate of protein folding.

Authors:  S J Hagen; J Hofrichter; A Szabo; W A Eaton
Journal:  Proc Natl Acad Sci U S A       Date:  1996-10-15       Impact factor: 11.205

7.  A hypothesis to reconcile the physical and chemical unfolding of proteins.

Authors:  Guilherme A P de Oliveira; Jerson L Silva
Journal:  Proc Natl Acad Sci U S A       Date:  2015-05-11       Impact factor: 11.205

8.  Relationship between nonlinear pressure-induced chemical shift changes and thermodynamic parameters.

Authors:  Markus Beck Erlach; Joerg Koehler; Beate Moeser; Dominik Horinek; Werner Kremer; Hans Robert Kalbitzer
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Review 9.  Pressure stability of proteins.

Authors:  J L Silva; G Weber
Journal:  Annu Rev Phys Chem       Date:  1993       Impact factor: 12.703

10.  Identification of a collapsed intermediate with non-native long-range interactions on the folding pathway of a pair of Fyn SH3 domain mutants by NMR relaxation dispersion spectroscopy.

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Review 2.  Lessons from pressure denaturation of proteins.

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