Literature DB >> 24798035

Relationship between nonlinear pressure-induced chemical shift changes and thermodynamic parameters.

Markus Beck Erlach1, Joerg Koehler, Beate Moeser, Dominik Horinek, Werner Kremer, Hans Robert Kalbitzer.   

Abstract

NMR chemical shift analysis is a powerful method to investigate local changes in the environment of the observed nuclear spin of a polypeptide that are induced by application of high hydrostatic pressure. Usually, in the fast exchange regime, the pressure dependence of chemical shifts is analyzed by a second order Taylor expansion providing the first- and second-order pressure coefficient B1 and B2. The coefficients then are interpreted in a qualitative manner. We show here that in a two-state model, the ratio of B2/B1 is related to thermodynamic parameters, namely the ratio of the difference of compressibility factors Δβ' and partial molar volumes ΔV. The analysis is applied to the random-coil model peptides Ac-Gly-Gly-Xxx-Ala-NH2, with Xxx being one of the 20 proteinogenic amino acids. The analysis gives an average Δβ'/ΔV ratio of 1.6 GPa(-1) provided the condition |ΔG(0)| ≪ 2RT holds for the difference of the Gibbs free energies (ΔG(0)) of the two states at the temperature (T0) and the pressure (p0). The amide proton and nitrogen B2/B1 of a given amino acid Xxx are strongly correlated, indicating that their pressure-dependent chemical shift changes are due to the same thermodynamic process. As a possible physical mechanism providing a two-state model, the hydrogen bonding of water with the corresponding amide protein was simulated for isoleucine in position Xxx. The obtained free energy could satisfy the relation |ΔG(0)| ≪ 2RT. The derived relation was applied to the β-amyloid peptide Aβ and the phosphocarrier protein HPr from S. carnosus. For the transition of state 1 to state 2' of Aβ, the derived relation of B2/B1 to Δβ'/ΔV can be confirmed experimentally. The HPr protein is characterized by substantially higher negative B2/B1 values than those found in the tetrapeptides with an average value of approximately -5.1 GPa(-1) (Δβ'/ΔV of 5.1 GPa(-1) provided |ΔG(0)| ≪ 2RT holds). Qualitatively, the B2/B1 ratio can be used to predict regions of the HPr protein involved in the interaction with enzyme I or HPr-kinase/phosphatase.

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Year:  2014        PMID: 24798035     DOI: 10.1021/jp502664a

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  8 in total

1.  Pressure dependence of side chain 13C chemical shifts in model peptides Ac-Gly-Gly-Xxx-Ala-NH2.

Authors:  Markus Beck Erlach; Joerg Koehler; Edson Crusca; Claudia E Munte; Masatsune Kainosho; Werner Kremer; Hans Robert Kalbitzer
Journal:  J Biomol NMR       Date:  2017-09-14       Impact factor: 2.835

2.  Pressure response of amide one-bond J-couplings in model peptides and proteins.

Authors:  Joerg Koehler; Markus Beck Erlach; Edson Crusca; Werner Kremer; Claudia E Munte; Alexander Meier; Hans Robert Kalbitzer
Journal:  J Biomol NMR       Date:  2014-08-13       Impact factor: 2.835

3.  Solution NMR investigation of the response of the lactose repressor core domain dimer to hydrostatic pressure.

Authors:  Brian Fuglestad; Matthew A Stetz; Zachary Belnavis; A Joshua Wand
Journal:  Biophys Chem       Date:  2017-02-24       Impact factor: 2.352

4.  The energetics of a three-state protein folding system probed by high-pressure relaxation dispersion NMR spectroscopy.

Authors:  Vitali Tugarinov; David S Libich; Virginia Meyer; Julien Roche; G Marius Clore
Journal:  Angew Chem Int Ed Engl       Date:  2015-09-14       Impact factor: 15.336

5.  Pressure dependence of backbone chemical shifts in the model peptides Ac-Gly-Gly-Xxx-Ala-NH2.

Authors:  Markus Beck Erlach; Joerg Koehler; Edson Crusca; Werner Kremer; Claudia E Munte; Hans Robert Kalbitzer
Journal:  J Biomol NMR       Date:  2016-06-22       Impact factor: 2.835

6.  Practical aspects of high-pressure NMR spectroscopy and its applications in protein biophysics and structural biology.

Authors:  José A Caro; A Joshua Wand
Journal:  Methods       Date:  2018-06-30       Impact factor: 3.608

7.  Volume and compressibility differences between protein conformations revealed by high-pressure NMR.

Authors:  Xingjian Xu; Donald Gagné; James M Aramini; Kevin H Gardner
Journal:  Biophys J       Date:  2021-01-30       Impact factor: 4.033

8.  Pressure dependence of side chain 1H and 15N-chemical shifts in the model peptides Ac-Gly-Gly-Xxx-Ala-NH2.

Authors:  Markus Beck Erlach; Joerg Koehler; Claudia E Munte; Werner Kremer; Edson Crusca; Masatsune Kainosho; Hans Robert Kalbitzer
Journal:  J Biomol NMR       Date:  2020-06-22       Impact factor: 2.835

  8 in total

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