Literature DB >> 30282759

Lessons from pressure denaturation of proteins.

Julien Roche1, Catherine A Royer2.   

Abstract

Although it is now relatively well understood how sequence defines and impacts global protein stability in specific structural contexts, the question of how sequence modulates the configurational landscape of proteins remains to be defined. Protein configurational equilibria are generally characterized by using various chemical denaturants or by changing temperature or pH. Another thermodynamic parameter which is less often used in such studies is high hydrostatic pressure. This review discusses the basis for pressure effects on protein structure and stability, and describes how the unique mechanisms of pressure-induced unfolding can provide unique insights into protein conformational landscapes.
© 2018 The Author(s).

Keywords:  pressure; protein folding; protein stability

Mesh:

Substances:

Year:  2018        PMID: 30282759      PMCID: PMC6228469          DOI: 10.1098/rsif.2018.0244

Source DB:  PubMed          Journal:  J R Soc Interface        ISSN: 1742-5662            Impact factor:   4.118


  116 in total

1.  pH dependence of stability of staphylococcal nuclease: evidence of substantial electrostatic interactions in the denatured state.

Authors:  S T Whitten; B García-Moreno E
Journal:  Biochemistry       Date:  2000-11-21       Impact factor: 3.162

2.  An experimentally determined protein folding energy landscape.

Authors:  Cecilia C Mello; Doug Barrick
Journal:  Proc Natl Acad Sci U S A       Date:  2004-09-17       Impact factor: 11.205

3.  High tolerance for ionizable residues in the hydrophobic interior of proteins.

Authors:  Daniel G Isom; Brian R Cannon; Carlos A Castañeda; Aaron Robinson; Bertrand García-Moreno
Journal:  Proc Natl Acad Sci U S A       Date:  2008-11-12       Impact factor: 11.205

4.  Probing the contribution of internal cavities to the volume change of protein unfolding under pressure.

Authors:  K J Frye; C A Royer
Journal:  Protein Sci       Date:  1998-10       Impact factor: 6.725

5.  Evolutionarily Conserved Pattern of Interactions in a Protein Revealed by Local Thermal Expansion Properties.

Authors:  Mariano Dellarole; Jose A Caro; Julien Roche; Martin Fossat; Philippe Barthe; Bertrand García-Moreno E; Catherine A Royer; Christian Roumestand
Journal:  J Am Chem Soc       Date:  2015-07-16       Impact factor: 15.419

6.  Structural, energetic, and dynamic responses of the native state ensemble of staphylococcal nuclease to cavity-creating mutations.

Authors:  Julien Roche; Jose A Caro; Mariano Dellarole; Ewelina Guca; Catherine A Royer; Bertrand E García-Moreno; Angel E Garcia; Christian Roumestand
Journal:  Proteins       Date:  2013-04-27

7.  Direct observation of parallel folding pathways revealed using a symmetric repeat protein system.

Authors:  Tural Aksel; Doug Barrick
Journal:  Biophys J       Date:  2014-07-01       Impact factor: 4.033

8.  Internal cavities and buried waters in globular proteins.

Authors:  A A Rashin; M Iofin; B Honig
Journal:  Biochemistry       Date:  1986-06-17       Impact factor: 3.162

9.  High-pressure NMR study of the dissociation of Arc repressor.

Authors:  X Peng; J Jonas; J L Silva
Journal:  Biochemistry       Date:  1994-07-12       Impact factor: 3.162

10.  Molecular determinant of the effects of hydrostatic pressure on protein folding stability.

Authors:  Calvin R Chen; George I Makhatadze
Journal:  Nat Commun       Date:  2017-02-07       Impact factor: 14.919

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  13 in total

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Authors:  Rupesh Agarwal; Utsab R Shrestha; Xiang-Qiang Chu; Loukas Petridis; Jeremy C Smith
Journal:  Biophys J       Date:  2020-05-29       Impact factor: 4.033

2.  Refining conformational ensembles of flexible proteins against small-angle x-ray scattering data.

Authors:  Francesco Pesce; Kresten Lindorff-Larsen
Journal:  Biophys J       Date:  2021-10-08       Impact factor: 4.033

Review 3.  Molecular photoswitches in aqueous environments.

Authors:  Jana Volarić; Wiktor Szymanski; Nadja A Simeth; Ben L Feringa
Journal:  Chem Soc Rev       Date:  2021-11-15       Impact factor: 54.564

4.  A Tale of Two Desolvation Potentials: An Investigation of Protein Behavior under High Hydrostatic Pressure.

Authors:  Andrei G Gasic; Margaret S Cheung
Journal:  J Phys Chem B       Date:  2020-02-24       Impact factor: 2.991

5.  Structure elucidation of the elusive Enzyme I monomer reveals the molecular mechanisms linking oligomerization and enzymatic activity.

Authors:  Trang T Nguyen; Rodolfo Ghirlando; Julien Roche; Vincenzo Venditti
Journal:  Proc Natl Acad Sci U S A       Date:  2021-05-18       Impact factor: 11.205

6.  Volume and compressibility differences between protein conformations revealed by high-pressure NMR.

Authors:  Xingjian Xu; Donald Gagné; James M Aramini; Kevin H Gardner
Journal:  Biophys J       Date:  2021-01-30       Impact factor: 4.033

Review 7.  Protein folding and surface interaction phase diagrams in vitro and in cells.

Authors:  Martin Gruebele
Journal:  FEBS Lett       Date:  2021-03-27       Impact factor: 4.124

8.  Protein unfolded states populated at high and ambient pressure are similarly compact.

Authors:  Balasubramanian Harish; Richard E Gillilan; Junjie Zou; Jinqiu Wang; Daniel P Raleigh; Catherine A Royer
Journal:  Biophys J       Date:  2021-05-04       Impact factor: 3.699

9.  Thermodynamic stability of hnRNP A1 low complexity domain revealed by high-pressure NMR.

Authors:  Jeffrey D Levengood; Jake Peterson; Blanton S Tolbert; Julien Roche
Journal:  Proteins       Date:  2021-02-15

10.  Unfolding and Aggregation of Lysozyme under the Combined Action of Dithiothreitol and Guanidine Hydrochloride: Optical Studies.

Authors:  Ruslan M Sarimov; Vladimir N Binhi; Tatiana A Matveeva; Nikita V Penkov; Sergey V Gudkov
Journal:  Int J Mol Sci       Date:  2021-03-08       Impact factor: 5.923

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