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Literature DB >> 31748843

XIPP: multi-dimensional NMR analysis software.

Daniel S Garrett¹, Mengli Cai², G Marius Clore³.

Abstract

Here we present the XIPP (eXtensible Interactive Peak Picker) NMR software for analyzing multidimensional NMR data of proteins, DNA, RNA and protein-nucleic acid complexes. XIPP organizes experiments into pre-defined studies and replaces our original PIPP software suite which is no longer supported. Default study types exist for backbone assignment, sidechain assignment, NOE assignment and several relaxation series experiments, used in solution NMR studies. XIPP is written in Java and Jython. The default study types are defined in Jython which can be modified and extended to create new types of studies.

Entities: CellLine Chemical Disease Gene Mutation Species

Keywords: Multidimensional NMR; Spectral analysis; Spectral assignment

Mesh：

Year: 2019 PMID： 31748843 PMCID： PMC7021585 DOI： 10.1007/s10858-019-00286-w

Source DB: PubMed Journal: J Biomol NMR ISSN： 0925-2738 Impact factor: 2.835

21 in total

1. Solution structure of the 40,000 Mr phosphoryl transfer complex between the N-terminal domain of enzyme I and HPr.

Authors: D S Garrett; Y J Seok; A Peterkofsky; A M Gronenborn; G M Clore
Journal: Nat Struct Biol Date: 1999-02

2. NMR View: A computer program for the visualization and analysis of NMR data.

Authors: B A Johnson; R A Blevins
Journal: J Biomol NMR Date: 1994-09 Impact factor: 2.835

3. The program XEASY for computer-supported NMR spectral analysis of biological macromolecules.

Authors: C Bartels; T H Xia; M Billeter; P Güntert; K Wüthrich
Journal: J Biomol NMR Date: 1995-07 Impact factor: 2.835

4. Identification by NMR of the binding surface for the histidine-containing phosphocarrier protein HPr on the N-terminal domain of enzyme I of the Escherichia coli phosphotransferase system.

Authors: D S Garrett; Y J Seok; A Peterkofsky; G M Clore; A M Gronenborn
Journal: Biochemistry Date: 1997-04-15 Impact factor: 3.162

5. NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors: F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal: J Biomol NMR Date: 1995-11 Impact factor: 2.835

6. The energetics of a three-state protein folding system probed by high-pressure relaxation dispersion NMR spectroscopy.

Authors: Vitali Tugarinov; David S Libich; Virginia Meyer; Julien Roche; G Marius Clore
Journal: Angew Chem Int Ed Engl Date: 2015-09-14 Impact factor: 15.336

XIPP: multi-dimensional NMR analysis software.

1. Solution structure of the 40,000 Mr phosphoryl transfer complex between the N-terminal domain of enzyme I and HPr.

2. NMR View: A computer program for the visualization and analysis of NMR data.

3. The program XEASY for computer-supported NMR spectral analysis of biological macromolecules.

4. Identification by NMR of the binding surface for the histidine-containing phosphocarrier protein HPr on the N-terminal domain of enzyme I of the Escherichia coli phosphotransferase system.

5. NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

6. The energetics of a three-state protein folding system probed by high-pressure relaxation dispersion NMR spectroscopy.

Review 7. Determining the structures of large proteins and protein complexes by NMR.

8. Visualizing transient dark states by NMR spectroscopy.

9. The CCPN data model for NMR spectroscopy: development of a software pipeline.

10. CcpNmr AnalysisAssign: a flexible platform for integrated NMR analysis.

1. Sortase-assembled pili in Corynebacterium diphtheriae are built using a latch mechanism.