Literature DB >> 26284673

The structural biology of biosynthetic megaenzymes.

Kira J Weissman1.   

Abstract

The modular polyketide synthases (PKSs) and nonribosomal peptide synthetases (NRPSs) are among the largest and most complicated enzymes in nature. In these biosynthetic systems, independently folding protein domains, which are organized into units called 'modules', operate in assembly-line fashion to construct polymeric chains and tailor their functionalities. Products of PKSs and NRPSs include a number of blockbuster medicines, and this has motivated researchers to understand how they operate so that they can be modified by genetic engineering. Beginning in the 1990s, structural biology has provided a number of key insights. The emerging picture is one of remarkable dynamics and conformational programming in which the chemical states of individual catalytic domains are communicated to the others, configuring the modules for the next stage in the biosynthesis. This unexpected level of complexity most likely accounts for the low success rate of empirical genetic engineering experiments and suggests ways forward for productive megaenzyme synthetic biology.

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Year:  2015        PMID: 26284673     DOI: 10.1038/nchembio.1883

Source DB:  PubMed          Journal:  Nat Chem Biol        ISSN: 1552-4450            Impact factor:   15.040


  98 in total

1.  Active-site residue, domain and module swaps in modular polyketide synthases.

Authors:  Francesca Del Vecchio; Hrvoje Petkovic; Steven G Kendrew; Lindsey Low; Barrie Wilkinson; Rachel Lill; Jesús Cortés; Brian A M Rudd; Jim Staunton; Peter F Leadlay
Journal:  J Ind Microbiol Biotechnol       Date:  2003-06-14       Impact factor: 3.346

2.  The structure of docking domains in modular polyketide synthases.

Authors:  R William Broadhurst; Daniel Nietlispach; Michael P Wheatcroft; Peter F Leadlay; Kira J Weissman
Journal:  Chem Biol       Date:  2003-08

Review 3.  Biosynthesis of polyketides by trans-AT polyketide synthases.

Authors:  Jörn Piel
Journal:  Nat Prod Rep       Date:  2010-05-12       Impact factor: 13.423

4.  Structural and functional studies of a trans-acyltransferase polyketide assembly line enzyme that catalyzes stereoselective α- and β-ketoreduction.

Authors:  Shawn K Piasecki; Jianting Zheng; Abram J Axelrod; Madeline E Detelich; Adrian T Keatinge-Clay
Journal:  Proteins       Date:  2014-04-16

5.  Structure of PA1221, a nonribosomal peptide synthetase containing adenylation and peptidyl carrier protein domains.

Authors:  Carter A Mitchell; Ce Shi; Courtney C Aldrich; Andrew M Gulick
Journal:  Biochemistry       Date:  2012-04-03       Impact factor: 3.162

Review 6.  Architecture of the polyketide synthase module: surprises from electron cryo-microscopy.

Authors:  Janet L Smith; Georgios Skiniotis; David H Sherman
Journal:  Curr Opin Struct Biol       Date:  2015-03-16       Impact factor: 6.809

7.  Structural studies of an A2-type modular polyketide synthase ketoreductase reveal features controlling α-substituent stereochemistry.

Authors:  Jianting Zheng; Shawn K Piasecki; Adrian T Keatinge-Clay
Journal:  ACS Chem Biol       Date:  2013-06-24       Impact factor: 5.100

8.  Modular structure of peptide synthetases revealed by dissection of the multifunctional enzyme GrsA.

Authors:  T Stachelhaus; M A Marahiel
Journal:  J Biol Chem       Date:  1995-03-17       Impact factor: 5.157

9.  Cyanobacterial polyketide synthase docking domains: a tool for engineering natural product biosynthesis.

Authors:  Jonathan R Whicher; Sarah S Smaga; Douglas A Hansen; William C Brown; William H Gerwick; David H Sherman; Janet L Smith
Journal:  Chem Biol       Date:  2013-10-31

10.  Divergence of multimodular polyketide synthases revealed by a didomain structure.

Authors:  Jianting Zheng; Darren C Gay; Borries Demeler; Mark A White; Adrian T Keatinge-Clay
Journal:  Nat Chem Biol       Date:  2012-05-27       Impact factor: 15.040

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  67 in total

Review 1.  Natural product discovery: past, present, and future.

Authors:  Leonard Katz; Richard H Baltz
Journal:  J Ind Microbiol Biotechnol       Date:  2016-01-06       Impact factor: 3.346

2.  Synthetic cycle of the initiation module of a formylating nonribosomal peptide synthetase.

Authors:  Janice M Reimer; Martin N Aloise; Paul M Harrison; T Martin Schmeing
Journal:  Nature       Date:  2016-01-14       Impact factor: 49.962

3.  Mechanism of Integrated β-Lactam Formation by a Nonribosomal Peptide Synthetase during Antibiotic Synthesis.

Authors:  Darcie H Long; Craig A Townsend
Journal:  Biochemistry       Date:  2018-05-03       Impact factor: 3.162

4.  FRET monitoring of a nonribosomal peptide synthetase.

Authors:  Jonas Alfermann; Xun Sun; Florian Mayerthaler; Thomas E Morrell; Eva Dehling; Gerrit Volkmann; Tamiki Komatsuzaki; Haw Yang; Henning D Mootz
Journal:  Nat Chem Biol       Date:  2017-07-24       Impact factor: 15.040

5.  Fatty acid synthases: Re-engineering biofactories.

Authors:  Timm Maier
Journal:  Nat Chem Biol       Date:  2017-03-22       Impact factor: 15.040

Review 6.  X-ray Scattering Studies of Protein Structural Dynamics.

Authors:  Steve P Meisburger; William C Thomas; Maxwell B Watkins; Nozomi Ando
Journal:  Chem Rev       Date:  2017-05-30       Impact factor: 60.622

7.  Synthetic biology advances and applications in the biotechnology industry: a perspective.

Authors:  Leonard Katz; Yvonne Y Chen; Ramon Gonzalez; Todd C Peterson; Huimin Zhao; Richard H Baltz
Journal:  J Ind Microbiol Biotechnol       Date:  2018-06-18       Impact factor: 3.346

Review 8.  Refining and expanding nonribosomal peptide synthetase function and mechanism.

Authors:  Matt McErlean; Jonathan Overbay; Steven Van Lanen
Journal:  J Ind Microbiol Biotechnol       Date:  2019-01-23       Impact factor: 3.346

9.  Structural and dynamic characterization of a freestanding acyl carrier protein involved in the biosynthesis of cyclic lipopeptide antibiotics.

Authors:  Subrata Paul; Hiroaki Ishida; Leonard T Nguyen; Zhihong Liu; Hans J Vogel
Journal:  Protein Sci       Date:  2017-03-01       Impact factor: 6.725

10.  pH-Rate profiles establish that polyketide synthase dehydratase domains utilize a single-base mechanism.

Authors:  Xinqiang Xie; David E Cane
Journal:  Org Biomol Chem       Date:  2018-12-05       Impact factor: 3.876

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