Literature DB >> 25791608

Architecture of the polyketide synthase module: surprises from electron cryo-microscopy.

Janet L Smith1, Georgios Skiniotis2, David H Sherman3.   

Abstract

Modular polyketide synthases (PKS) produce a vast array of bioactive molecules that are the basis of many highly valued pharmaceuticals. The biosynthesis of these compounds is based on ordered assembly lines of multi-domain modules, each extending and modifying a specific chain-elongation intermediate before transfer to the next module for further processing. The first 3D structures of a full polyketide synthase module in different functional states were obtained recently by electron cryo-microscopy. The unexpected module architecture revealed a striking evolutionary divergence of the polyketide synthase compared to its metazoan fatty acid synthase homolog, as well as remarkable conformational rearrangements dependent on its biochemical state during the full catalytic cycle. The design and dynamics of the module are highly optimized for both catalysis and fidelity in the construction of complex, biologically active natural products.
Copyright © 2015 Elsevier Ltd. All rights reserved.

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Year:  2015        PMID: 25791608      PMCID: PMC4476912          DOI: 10.1016/j.sbi.2015.02.014

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  60 in total

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Authors:  Alice Y Chen; Nathan A Schnarr; Chu-Young Kim; David E Cane; Chaitan Khosla
Journal:  J Am Chem Soc       Date:  2006-03-08       Impact factor: 15.419

2.  The 2.7-Angstrom crystal structure of a 194-kDa homodimeric fragment of the 6-deoxyerythronolide B synthase.

Authors:  Yinyan Tang; Chu-Young Kim; Irimpan I Mathews; David E Cane; Chaitan Khosla
Journal:  Proc Natl Acad Sci U S A       Date:  2006-07-14       Impact factor: 11.205

3.  Chemoenzymatic synthesis of the polyketide macrolactone 10-deoxymethynolide.

Authors:  Courtney C Aldrich; Lakshmanan Venkatraman; David H Sherman; Robert A Fecik
Journal:  J Am Chem Soc       Date:  2005-06-29       Impact factor: 15.419

4.  Structural and mechanistic analysis of protein interactions in module 3 of the 6-deoxyerythronolide B synthase.

Authors:  Yinyan Tang; Alice Y Chen; Chu-Young Kim; David E Cane; Chaitan Khosla
Journal:  Chem Biol       Date:  2007-08

5.  Structure and molecular organization of mammalian fatty acid synthase.

Authors:  Francisco J Asturias; James Z Chadick; Iris K Cheung; Helga Stark; Andrzej Witkowski; Anil K Joshi; Stuart Smith
Journal:  Nat Struct Mol Biol       Date:  2005-02-13       Impact factor: 15.369

6.  The structure of a ketoreductase determines the organization of the beta-carbon processing enzymes of modular polyketide synthases.

Authors:  Adrian T Keatinge-Clay; Robert M Stroud
Journal:  Structure       Date:  2006-03-23       Impact factor: 5.006

7.  Biochemical investigation of pikromycin biosynthesis employing native penta- and hexaketide chain elongation intermediates.

Authors:  Courtney C Aldrich; Brian J Beck; Robert A Fecik; David H Sherman
Journal:  J Am Chem Soc       Date:  2005-06-15       Impact factor: 15.419

8.  A tylosin ketoreductase reveals how chirality is determined in polyketides.

Authors:  Adrian T Keatinge-Clay
Journal:  Chem Biol       Date:  2007-08

9.  Evidence for two catalytically independent clusters of active sites in a functional modular polyketide synthase.

Authors:  C M Kao; R Pieper; D E Cane; C Khosla
Journal:  Biochemistry       Date:  1996-09-24       Impact factor: 3.162

10.  Architecture of mammalian fatty acid synthase at 4.5 A resolution.

Authors:  Timm Maier; Simon Jenni; Nenad Ban
Journal:  Science       Date:  2006-03-03       Impact factor: 47.728

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  12 in total

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2.  Active Multienzyme Assemblies for Long-Chain Olefinic Hydrocarbon Biosynthesis.

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Review 3.  Cryo-EM: beyond the microscope.

Authors:  Lesley A Earl; Veronica Falconieri; Jacqueline Ls Milne; Sriram Subramaniam
Journal:  Curr Opin Struct Biol       Date:  2017-06-21       Impact factor: 6.809

4.  Solution structure of the type I polyketide synthase Pks13 from Mycobacterium tuberculosis.

Authors:  Cécile Bon; Stéphanie Cabantous; Sylviane Julien; Valérie Guillet; Christian Chalut; Julie Rima; Yoann Brison; Wladimir Malaga; Angelique Sanchez-Dafun; Sabine Gavalda; Annaïk Quémard; Julien Marcoux; Geoffrey S Waldo; Christophe Guilhot; Lionel Mourey
Journal:  BMC Biol       Date:  2022-06-21       Impact factor: 7.364

5.  Solution Structure of a Nonribosomal Peptide Synthetase Carrier Protein Loaded with Its Substrate Reveals Transient, Well-Defined Contacts.

Authors:  Andrew C Goodrich; Bradley J Harden; Dominique P Frueh
Journal:  J Am Chem Soc       Date:  2015-09-15       Impact factor: 15.419

6.  Traffic Control in Modular Polyketide Synthases.

Authors:  Kara Finzel; Michael D Burkart
Journal:  ACS Cent Sci       Date:  2016-01-15       Impact factor: 14.553

Review 7.  Acyltransferases as Tools for Polyketide Synthase Engineering.

Authors:  Ewa Maria Musiol-Kroll; Wolfgang Wohlleben
Journal:  Antibiotics (Basel)       Date:  2018-07-18

Review 8.  Recent trends in biocatalysis.

Authors:  Dong Yi; Thomas Bayer; Christoffel P S Badenhorst; Shuke Wu; Mark Doerr; Matthias Höhne; Uwe T Bornscheuer
Journal:  Chem Soc Rev       Date:  2021-06-18       Impact factor: 60.615

9.  The dynamic organization of fungal acetyl-CoA carboxylase.

Authors:  Moritz Hunkeler; Edward Stuttfeld; Anna Hagmann; Stefan Imseng; Timm Maier
Journal:  Nat Commun       Date:  2016-04-13       Impact factor: 14.919

10.  Characterizing Aciniform Silk Repetitive Domain Backbone Dynamics and Hydrodynamic Modularity.

Authors:  Marie-Laurence Tremblay; Lingling Xu; Muzaddid Sarker; Xiang-Qin Liu; Jan K Rainey
Journal:  Int J Mol Sci       Date:  2016-08-10       Impact factor: 5.923

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