Literature DB >> 29915997

Synthetic biology advances and applications in the biotechnology industry: a perspective.

Leonard Katz1, Yvonne Y Chen2, Ramon Gonzalez3, Todd C Peterson4, Huimin Zhao5, Richard H Baltz6.   

Abstract

Synthetic biology is a logical extension of what has been called recombinant DNA (rDNA) technology or genetic engineering since the 1970s. As rDNA technology has been the driver for the development of a thriving biotechnology industry today, starting with the commercialization of biosynthetic human insulin in the early 1980s, synthetic biology has the potential to take the industry to new heights in the coming years. Synthetic biology advances have been driven by dramatic cost reductions in DNA sequencing and DNA synthesis; by the development of sophisticated tools for genome editing, such as CRISPR/Cas9; and by advances in informatics, computational tools, and infrastructure to facilitate and scale analysis and design. Synthetic biology approaches have already been applied to the metabolic engineering of microorganisms for the production of industrially important chemicals and for the engineering of human cells to treat medical disorders. It also shows great promise to accelerate the discovery and development of novel secondary metabolites from microorganisms through traditional, engineered, and combinatorial biosynthesis. We anticipate that synthetic biology will continue to have broadening impacts on the biotechnology industry to address ongoing issues of human health, world food supply, renewable energy, and industrial chemicals and enzymes.

Entities:  

Keywords:  Biosensors; Biotechnology industry; CRISPR/Cas9; Combinatorial biosynthesis; DNA assembly; DNA synthesis; Mammalian cells; Metabolic engineering; Natural products; Synthetic biology

Mesh:

Substances:

Year:  2018        PMID: 29915997     DOI: 10.1007/s10295-018-2056-y

Source DB:  PubMed          Journal:  J Ind Microbiol Biotechnol        ISSN: 1367-5435            Impact factor:   3.346


  135 in total

1.  Mismatch cleavage by single-strand specific nucleases.

Authors:  Bradley J Till; Chris Burtner; Luca Comai; Steven Henikoff
Journal:  Nucleic Acids Res       Date:  2004-05-11       Impact factor: 16.971

2.  Standardized reagents and protocols for engineering zinc finger nucleases by modular assembly.

Authors:  David A Wright; Stacey Thibodeau-Beganny; Jeffry D Sander; Ronnie J Winfrey; Andrew S Hirsh; Magdalena Eichtinger; Fengli Fu; Matthew H Porteus; Drena Dobbs; Daniel F Voytas; J Keith Joung
Journal:  Nat Protoc       Date:  2006       Impact factor: 13.491

3.  CRISPR-Cas9 Based Engineering of Actinomycetal Genomes.

Authors:  Yaojun Tong; Pep Charusanti; Lixin Zhang; Tilmann Weber; Sang Yup Lee
Journal:  ACS Synth Biol       Date:  2015-04-07       Impact factor: 5.110

4.  Synthetic generation of influenza vaccine viruses for rapid response to pandemics.

Authors:  Philip R Dormitzer; Pirada Suphaphiphat; Daniel G Gibson; David E Wentworth; Timothy B Stockwell; Mikkel A Algire; Nina Alperovich; Mario Barro; David M Brown; Stewart Craig; Brian M Dattilo; Evgeniya A Denisova; Ivna De Souza; Markus Eickmann; Vivien G Dugan; Annette Ferrari; Raul C Gomila; Liqun Han; Casey Judge; Sarthak Mane; Mikhail Matrosovich; Chuck Merryman; Giuseppe Palladino; Gene A Palmer; Terika Spencer; Thomas Strecker; Heidi Trusheim; Jennifer Uhlendorff; Yingxia Wen; Anthony C Yee; Jayshree Zaveri; Bin Zhou; Stephan Becker; Armen Donabedian; Peter W Mason; John I Glass; Rino Rappuoli; J Craig Venter
Journal:  Sci Transl Med       Date:  2013-05-15       Impact factor: 17.956

5.  Refactoring the nitrogen fixation gene cluster from Klebsiella oxytoca.

Authors:  Karsten Temme; Dehua Zhao; Christopher A Voigt
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-16       Impact factor: 11.205

Review 6.  DNA synthesis, assembly and applications in synthetic biology.

Authors:  Siying Ma; Nicholas Tang; Jingdong Tian
Journal:  Curr Opin Chem Biol       Date:  2012-05-25       Impact factor: 8.822

Review 7.  Microbial genome mining for accelerated natural products discovery: is a renaissance in the making?

Authors:  Brian O Bachmann; Steven G Van Lanen; Richard H Baltz
Journal:  J Ind Microbiol Biotechnol       Date:  2013-12-17       Impact factor: 3.346

Review 8.  Synthetic biology routes to bio-artificial intelligence.

Authors:  Darren N Nesbeth; Alexey Zaikin; Yasushi Saka; M Carmen Romano; Claudiu V Giuraniuc; Oleg Kanakov; Tetyana Laptyeva
Journal:  Essays Biochem       Date:  2016-11-30       Impact factor: 8.000

9.  Engineering Customized Cell Sensing and Response Behaviors Using Synthetic Notch Receptors.

Authors:  Leonardo Morsut; Kole T Roybal; Xin Xiong; Russell M Gordley; Scott M Coyle; Matthew Thomson; Wendell A Lim
Journal:  Cell       Date:  2016-01-28       Impact factor: 41.582

10.  DNA assembler, an in vivo genetic method for rapid construction of biochemical pathways.

Authors:  Zengyi Shao; Hua Zhao; Huimin Zhao
Journal:  Nucleic Acids Res       Date:  2008-12-12       Impact factor: 16.971

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  8 in total

Review 1.  Bacteriophage-resistant industrial fermentation strains: from the cradle to CRISPR/Cas9.

Authors:  Richard H Baltz
Journal:  J Ind Microbiol Biotechnol       Date:  2018-09-06       Impact factor: 3.346

2.  Fail-safe genetic codes designed to intrinsically contain engineered organisms.

Authors:  Jonathan Calles; Isaac Justice; Detravious Brinkley; Alexa Garcia; Drew Endy
Journal:  Nucleic Acids Res       Date:  2019-11-04       Impact factor: 16.971

Review 3.  Poly(4-Hydroxybutyrate): Current State and Perspectives.

Authors:  Camila Utsunomia; Qun Ren; Manfred Zinn
Journal:  Front Bioeng Biotechnol       Date:  2020-04-03

Review 4.  Intelligent host engineering for metabolic flux optimisation in biotechnology.

Authors:  Lachlan J Munro; Douglas B Kell
Journal:  Biochem J       Date:  2021-10-29       Impact factor: 3.857

Review 5.  Precursor Quantitation Methods for Next Generation Food Production.

Authors:  Xinran Wang; Xiaozhou Luo
Journal:  Front Bioeng Biotechnol       Date:  2022-03-10

6.  Genome mining for drug discovery: cyclic lipopeptides related to daptomycin.

Authors:  Richard H Baltz
Journal:  J Ind Microbiol Biotechnol       Date:  2021-06-04       Impact factor: 4.258

7.  Engineering of Leuconostoc citreum for Efficient Bioconversion of Soy Isoflavone Glycosides to Their Aglycone Forms.

Authors:  Jaewoo Son; Ki Jun Jeong
Journal:  Int J Mol Sci       Date:  2022-08-24       Impact factor: 6.208

Review 8.  Genome mining for drug discovery: progress at the front end.

Authors:  Richard H Baltz
Journal:  J Ind Microbiol Biotechnol       Date:  2021-12-23       Impact factor: 4.258

  8 in total

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