Literature DB >> 29701951

Mechanism of Integrated β-Lactam Formation by a Nonribosomal Peptide Synthetase during Antibiotic Synthesis.

Darcie H Long1, Craig A Townsend1.   

Abstract

Modular nonribosomal peptide synthetases (NRPSs) are large, multidomain engines of bioactive natural product biosynthesis that function as molecular "assembly lines" in which monomer units are selectively bound, modified, and linked in a specific order and number dictated by their mega-enzyme templates. Recently, a condensation domain in an NRPS was discovered to carry out the synthesis of an integrated β-lactam ring from a substrate seryl residue during antibiotic biosynthesis. We report here a series of experiments supporting a mechanism that involves C-N bond formation by stepwise elimination/addition reactions followed by canonical NRPS-catalyzed amide bond synthesis to achieve β-lactam formation. Partitioning of reactive intermediates formed during the multistep catalytic cycle provided insight into the ability of the NRPS to overcome the reversibility of corresponding reactions in solution and enforce directionality during synthesis.

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Year:  2018        PMID: 29701951      PMCID: PMC6196720          DOI: 10.1021/acs.biochem.8b00411

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  28 in total

1.  Synthetic cycle of the initiation module of a formylating nonribosomal peptide synthetase.

Authors:  Janice M Reimer; Martin N Aloise; Paul M Harrison; T Martin Schmeing
Journal:  Nature       Date:  2016-01-14       Impact factor: 49.962

Review 2.  Biosynthesis of nonribosomal peptides1.

Authors:  Robert Finking; Mohamed A Marahiel
Journal:  Annu Rev Microbiol       Date:  2004       Impact factor: 15.500

Review 3.  Assembly-line enzymology for polyketide and nonribosomal Peptide antibiotics: logic, machinery, and mechanisms.

Authors:  Michael A Fischbach; Christopher T Walsh
Journal:  Chem Rev       Date:  2006-08       Impact factor: 60.622

4.  Crystal structures of the first condensation domain of CDA synthetase suggest conformational changes during the synthetic cycle of nonribosomal peptide synthetases.

Authors:  Kristjan Bloudoff; Dmitry Rodionov; T Martin Schmeing
Journal:  J Mol Biol       Date:  2013-06-10       Impact factor: 5.469

5.  In vivo characterization of nonribosomal peptide synthetases NocA and NocB in the biosynthesis of nocardicin A.

Authors:  Jeanne M Davidsen; Craig A Townsend
Journal:  Chem Biol       Date:  2012-02-24

6.  Elucidation of the structure and reaction mechanism of sorghum hydroxycinnamoyltransferase and its structural relationship to other coenzyme a-dependent transferases and synthases.

Authors:  Alexander M Walker; Robert P Hayes; Buhyun Youn; Wilfred Vermerris; Scott E Sattler; ChulHee Kang
Journal:  Plant Physiol       Date:  2013-04-26       Impact factor: 8.340

7.  Biochemical determination of enzyme-bound metabolites: preferential accumulation of a programmed octaketide on the enediyne polyketide synthase CalE8.

Authors:  Katherine Belecki; Craig A Townsend
Journal:  J Am Chem Soc       Date:  2013-09-17       Impact factor: 15.419

8.  The biosynthetic gene cluster for a monocyclic beta-lactam antibiotic, nocardicin A.

Authors:  Michele Gunsior; Steven D Breazeale; Amanda J Lind; Jacques Ravel; James W Janc; Craig A Townsend
Journal:  Chem Biol       Date:  2004-07

9.  Structural characterization of a 140 degrees domain movement in the two-step reaction catalyzed by 4-chlorobenzoate:CoA ligase.

Authors:  Albert S Reger; Rui Wu; Debra Dunaway-Mariano; Andrew M Gulick
Journal:  Biochemistry       Date:  2008-07-12       Impact factor: 3.162

Review 10.  Structural insight into the necessary conformational changes of modular nonribosomal peptide synthetases.

Authors:  Andrew M Gulick
Journal:  Curr Opin Chem Biol       Date:  2016-09-25       Impact factor: 8.822

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  4 in total

1.  Discovery and Biosynthesis of Azabicyclene, a Conserved Nonribosomal Peptide in Pseudomonas aeruginosa.

Authors:  Jon B Patteson; Adam R Lescallette; Bo Li
Journal:  Org Lett       Date:  2019-06-25       Impact factor: 6.005

2.  Aminoacyl chain translocation catalysed by a type II thioesterase domain in an unusual non-ribosomal peptide synthetase.

Authors:  Shan Wang; William D G Brittain; Qian Zhang; Zhou Lu; Ming Him Tong; Kewen Wu; Kwaku Kyeremeh; Matthew Jenner; Yi Yu; Steven L Cobb; Hai Deng
Journal:  Nat Commun       Date:  2022-01-10       Impact factor: 17.694

3.  The hidden enzymology of bacterial natural product biosynthesis.

Authors:  Thomas A Scott; Jörn Piel
Journal:  Nat Rev Chem       Date:  2019-06-12       Impact factor: 34.035

4.  Structure of a bound peptide phosphonate reveals the mechanism of nocardicin bifunctional thioesterase epimerase-hydrolase half-reactions.

Authors:  Ketan D Patel; Felipe B d'Andrea; Nicole M Gaudelli; Andrew R Buller; Craig A Townsend; Andrew M Gulick
Journal:  Nat Commun       Date:  2019-08-27       Impact factor: 14.919

  4 in total

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