Literature DB >> 30673909

Refining and expanding nonribosomal peptide synthetase function and mechanism.

Matt McErlean1, Jonathan Overbay1, Steven Van Lanen2.   

Abstract

Nonribosomal peptide synthetases (NRPSs) are involved in the biosynthesis of numerous peptide and peptide-like natural products that have been exploited in medicine, agriculture, and biotechnology, among other fields. As a consequence, there have been considerable efforts aimed at understanding how NRPSs orchestrate the assembly of these natural products. This review highlights several recent examples that continue to expand upon the fundamental knowledge of NRPS mechanism and includes (1) the discovery of new NRPS substrates and the mechanism by which these sometimes structurally complex substrates are made, (2) the characterization of new NRPS activities and domains that function during the process of peptide assembly, and (3) the various catalytic strategies that are utilized to release the NRPS product. These findings continue to strengthen the predictive power for connecting genes to products, thereby facilitating natural product discovery and development in the Genomics Era.

Entities:  

Keywords:  Bioinformatics; Discovery; Domain; Mechanism; NRPS; Natural products

Mesh:

Substances:

Year:  2019        PMID: 30673909      PMCID: PMC6460464          DOI: 10.1007/s10295-018-02130-w

Source DB:  PubMed          Journal:  J Ind Microbiol Biotechnol        ISSN: 1367-5435            Impact factor:   3.346


  123 in total

1.  Predictive, structure-based model of amino acid recognition by nonribosomal peptide synthetase adenylation domains.

Authors:  G L Challis; J Ravel; C A Townsend
Journal:  Chem Biol       Date:  2000-03

2.  The specificity-conferring code of adenylation domains in nonribosomal peptide synthetases.

Authors:  T Stachelhaus; H D Mootz; M A Marahiel
Journal:  Chem Biol       Date:  1999-08

3.  Chain termination steps in nonribosomal peptide synthetase assembly lines: directed acyl-S-enzyme breakdown in antibiotic and siderophore biosynthesis.

Authors:  T A Keating; D E Ehmann; R M Kohli; C G Marshall; J W Trauger; C T Walsh
Journal:  Chembiochem       Date:  2001-02-02       Impact factor: 3.164

4.  The Biosynthesis of Vancomycin-Type Glycopeptide Antibiotics-New Insights into the Cyclization Steps This work was supported by the Deutsche Forschungsgemeinschaft (SFB 323). We thank M. Schierle, Dr. S. Stevanovic and Prof. H.-G. Rammensee for help with Edman degradation and J. Turner, Prof. B. List and Prof. D. Boger (La Jolla, USA) for discussions on the work.

Authors:  Daniel Bischoff; Stefan Pelzer; Alexandra Höltzel; Graeme J. Nicholson; Sigrid Stockert; Wolfgang Wohlleben; Günther Jung; Roderich D. Süssmuth
Journal:  Angew Chem Int Ed Engl       Date:  2001-05-04       Impact factor: 15.336

5.  Peptide cyclization catalysed by the thioesterase domain of tyrocidine synthetase.

Authors:  J W Trauger; R M Kohli; H D Mootz; M A Marahiel; C T Walsh
Journal:  Nature       Date:  2000-09-14       Impact factor: 49.962

6.  An oxidation domain in the BlmIII non-ribosomal peptide synthetase probably catalyzing thiazole formation in the biosynthesis of the anti-tumor drug bleomycin in Streptomyces verticillus ATCC15003.

Authors:  L Du; M Chen; C Sánchez; B Shen
Journal:  FEMS Microbiol Lett       Date:  2000-08-15       Impact factor: 2.742

7.  Mutational analysis of the epimerization domain in the initiation module PheATE of gramicidin S synthetase.

Authors:  T Stachelhaus; C T Walsh
Journal:  Biochemistry       Date:  2000-05-16       Impact factor: 3.162

8.  Aminoacyl-CoAs as probes of condensation domain selectivity in nonribosomal peptide synthesis.

Authors:  P J Belshaw; C T Walsh; T Stachelhaus
Journal:  Science       Date:  1999-04-16       Impact factor: 47.728

9.  High incorporation of L-amino acids to cereulide, an emetic toxin from Bacillus cereus.

Authors:  M Kuse; T Franz; K Koga; S Suwan; M Isobe; N Agata; M Ohta
Journal:  Bioorg Med Chem Lett       Date:  2000-04-17       Impact factor: 2.823

10.  Assembly line enzymology by multimodular nonribosomal peptide synthetases: the thioesterase domain of E. coli EntF catalyzes both elongation and cyclolactonization.

Authors:  C A Shaw-Reid; N L Kelleher; H C Losey; A M Gehring; C Berg; C T Walsh
Journal:  Chem Biol       Date:  1999-06
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  15 in total

1.  Biosynthetic Cyclization Catalysts for the Assembly of Peptide and Polyketide Natural Products.

Authors:  Maria L Adrover-Castellano; Jennifer J Schmidt; David H Sherman
Journal:  ChemCatChem       Date:  2021-01-28       Impact factor: 5.686

2.  Diversity of Polyketide Synthases and Nonribosomal Peptide Synthetases Revealed Through Metagenomic Analysis of a Deep Oligotrophic Cave.

Authors:  Laima Lukoseviciute; Jolanta Lebedeva; Nomeda Kuisiene
Journal:  Microb Ecol       Date:  2020-07-08       Impact factor: 4.552

Review 3.  Antifungal peptides produced by actinomycetes and their biological activities against plant diseases.

Authors:  Dong Zhang; Yuele Lu; Hanchi Chen; Chutian Wu; Hui Zhang; Luyi Chen; Xiaolong Chen
Journal:  J Antibiot (Tokyo)       Date:  2020-03-02       Impact factor: 2.649

4.  Specificity of Nonribosomal Peptide Synthetases in the Biosynthesis of the Pseudomonas virulence factor.

Authors:  Gina L Morgan; Ashley M Kretsch; Kevin C Santa Maria; Savannah J Weeks; Bo Li
Journal:  Biochemistry       Date:  2019-06-17       Impact factor: 3.162

5.  Enzymatic Synthesis of Diverse Heterocycles by a Noncanonical Nonribosomal Peptide Synthetase.

Authors:  Gina L Morgan; Kelin Li; Drake M Crawford; Jeffrey Aubé; Bo Li
Journal:  ACS Chem Biol       Date:  2021-11-12       Impact factor: 5.100

6.  A novel family of non-secreted tridecaptin lipopeptide produced by Paenibacillus elgii.

Authors:  Rosiane Andrade da Costa; Isadora Emanoela Pereira Costa Andrade; Otávio Henrique Bezerra Pinto; Beatriz Blenda Pinheiro de Souza; Débora Luíza Albano Fulgêncio; Marise Leite Mendonça; Adriane Silva Kurokawa; Daniel Barros Ortega; Lucas Silva Carvalho; Ricardo Henrique Krüger; Marcelo Henrique Soller Ramada; Cristine Chaves Barreto
Journal:  Amino Acids       Date:  2022-07-21       Impact factor: 3.789

Review 7.  Identification and characterization of enzymes involved in the biosynthesis of pyrimidine nucleoside antibiotics.

Authors:  M McErlean; X Liu; Z Cui; B Gust; S G Van Lanen
Journal:  Nat Prod Rep       Date:  2021-07-21       Impact factor: 15.111

8.  Structure of a bound peptide phosphonate reveals the mechanism of nocardicin bifunctional thioesterase epimerase-hydrolase half-reactions.

Authors:  Ketan D Patel; Felipe B d'Andrea; Nicole M Gaudelli; Andrew R Buller; Craig A Townsend; Andrew M Gulick
Journal:  Nat Commun       Date:  2019-08-27       Impact factor: 14.919

Review 9.  Microbial metabolites: cause or consequence in gastrointestinal disease?

Authors:  Serge Alain Fobofou; Tor Savidge
Journal:  Am J Physiol Gastrointest Liver Physiol       Date:  2022-03-10       Impact factor: 4.871

Review 10.  Nonribosomal peptide synthetases and their biotechnological potential in Penicillium rubens.

Authors:  Riccardo Iacovelli; Roel A L Bovenberg; Arnold J M Driessen
Journal:  J Ind Microbiol Biotechnol       Date:  2021-08-24       Impact factor: 4.258

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