Literature DB >> 26192207

Complex wireframe DNA origami nanostructures with multi-arm junction vertices.

Fei Zhang1, Shuoxing Jiang1, Siyu Wu2, Yulin Li2, Chengde Mao2, Yan Liu1, Hao Yan1.   

Abstract

Structural DNA nanotechnology and the DNA origami technique, in particular, have provided a range of spatially addressable two- and three-dimensional nanostructures. These structures are, however, typically formed of tightly packed parallel helices. The development of wireframe structures should allow the creation of novel designs with unique functionalities, but engineering complex wireframe architectures with arbitrarily designed connections between selected vertices in three-dimensional space remains a challenge. Here, we report a design strategy for fabricating finite-size wireframe DNA nanostructures with high complexity and programmability. In our approach, the vertices are represented by n × 4 multi-arm junctions (n = 2-10) with controlled angles, and the lines are represented by antiparallel DNA crossover tiles of variable lengths. Scaffold strands are used to integrate the vertices and lines into fully assembled structures displaying intricate architectures. To demonstrate the versatility of the technique, a series of two-dimensional designs including quasi-crystalline patterns and curvilinear arrays or variable curvatures, and three-dimensional designs including a complex snub cube and a reconfigurable Archimedean solid were constructed.

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Year:  2015        PMID: 26192207     DOI: 10.1038/nnano.2015.162

Source DB:  PubMed          Journal:  Nat Nanotechnol        ISSN: 1748-3387            Impact factor:   39.213


  23 in total

1.  EMAN: semiautomated software for high-resolution single-particle reconstructions.

Authors:  S J Ludtke; P R Baldwin; W Chiu
Journal:  J Struct Biol       Date:  1999-12-01       Impact factor: 2.867

2.  Synthesis from DNA of a molecule with the connectivity of a cube.

Authors:  J H Chen; N C Seeman
Journal:  Nature       Date:  1991-04-18       Impact factor: 49.962

3.  Self-assembly of hexagonal DNA two-dimensional (2D) arrays.

Authors:  Yu He; Yi Chen; Haipeng Liu; Alexander E Ribbe; Chengde Mao
Journal:  J Am Chem Soc       Date:  2005-09-07       Impact factor: 15.419

4.  Self-assembly of symmetric finite-size DNA nanoarrays.

Authors:  Yan Liu; Yonggang Ke; Hao Yan
Journal:  J Am Chem Soc       Date:  2005-12-14       Impact factor: 15.419

5.  Folding DNA to create nanoscale shapes and patterns.

Authors:  Paul W K Rothemund
Journal:  Nature       Date:  2006-03-16       Impact factor: 49.962

6.  DNA gridiron nanostructures based on four-arm junctions.

Authors:  Dongran Han; Suchetan Pal; Yang Yang; Shuoxing Jiang; Jeanette Nangreave; Yan Liu; Hao Yan
Journal:  Science       Date:  2013-03-22       Impact factor: 47.728

7.  RNA nanostructures. A single-stranded architecture for cotranscriptional folding of RNA nanostructures.

Authors:  Cody Geary; Paul W K Rothemund; Ebbe S Andersen
Journal:  Science       Date:  2014-08-15       Impact factor: 47.728

Review 8.  Challenges and opportunities for structural DNA nanotechnology.

Authors:  Andre V Pinheiro; Dongran Han; William M Shih; Hao Yan
Journal:  Nat Nanotechnol       Date:  2011-11-06       Impact factor: 39.213

9.  Hierarchical self-assembly of DNA into symmetric supramolecular polyhedra.

Authors:  Yu He; Tao Ye; Min Su; Chuan Zhang; Alexander E Ribbe; Wen Jiang; Chengde Mao
Journal:  Nature       Date:  2008-03-13       Impact factor: 49.962

Review 10.  Structural DNA nanotechnology: state of the art and future perspective.

Authors:  Fei Zhang; Jeanette Nangreave; Yan Liu; Hao Yan
Journal:  J Am Chem Soc       Date:  2014-07-28       Impact factor: 15.419

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  71 in total

1.  DNA nanotechnology 2.5.

Authors: 
Journal:  Nat Nanotechnol       Date:  2015-09       Impact factor: 39.213

2.  Biomolecular self-assembly: DNA origami rewired.

Authors:  Ebbe Sloth Andersen
Journal:  Nat Nanotechnol       Date:  2015-09       Impact factor: 39.213

3.  Visualization of the Cellular Uptake and Trafficking of DNA Origami Nanostructures in Cancer Cells.

Authors:  Pengfei Wang; Mohammad Aminur Rahman; Zhixiang Zhao; Kristin Weiss; Chao Zhang; Zhengjia Chen; Selwyn J Hurwitz; Zhuo G Chen; Dong M Shin; Yonggang Ke
Journal:  J Am Chem Soc       Date:  2018-02-12       Impact factor: 15.419

4.  Programmed coherent coupling in a synthetic DNA-based excitonic circuit.

Authors:  Étienne Boulais; Nicolas P D Sawaya; Rémi Veneziano; Alessio Andreoni; James L Banal; Toru Kondo; Sarthak Mandal; Su Lin; Gabriela S Schlau-Cohen; Neal W Woodbury; Hao Yan; Alán Aspuru-Guzik; Mark Bathe
Journal:  Nat Mater       Date:  2017-11-13       Impact factor: 43.841

Review 5.  Building membrane nanopores.

Authors:  Stefan Howorka
Journal:  Nat Nanotechnol       Date:  2017-07-06       Impact factor: 39.213

6.  Assembly of multienzyme complexes on DNA nanostructures.

Authors:  Jinglin Fu; Yuhe Renee Yang; Soma Dhakal; Zhao Zhao; Minghui Liu; Ting Zhang; Nils G Walter; Hao Yan
Journal:  Nat Protoc       Date:  2016-10-20       Impact factor: 13.491

7.  Universal folding pathways of polyhedron nets.

Authors:  Paul M Dodd; Pablo F Damasceno; Sharon C Glotzer
Journal:  Proc Natl Acad Sci U S A       Date:  2018-07-03       Impact factor: 11.205

Review 8.  Dynamic DNA Structures.

Authors:  Yingwei Zhang; Victor Pan; Xue Li; Xueqin Yang; Haofei Li; Pengfei Wang; Yonggang Ke
Journal:  Small       Date:  2019-04-10       Impact factor: 13.281

9.  Anniversary issues.

Authors: 
Journal:  Nat Nanotechnol       Date:  2016-04       Impact factor: 39.213

10.  Automated Sequence Design of 3D Polyhedral Wireframe DNA Origami with Honeycomb Edges.

Authors:  Hyungmin Jun; Tyson R Shepherd; Kaiming Zhang; William P Bricker; Shanshan Li; Wah Chiu; Mark Bathe
Journal:  ACS Nano       Date:  2019-01-24       Impact factor: 15.881

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