Literature DB >> 18337818

Hierarchical self-assembly of DNA into symmetric supramolecular polyhedra.

Yu He1, Tao Ye, Min Su, Chuan Zhang, Alexander E Ribbe, Wen Jiang, Chengde Mao.   

Abstract

DNA is renowned for its double helix structure and the base pairing that enables the recognition and highly selective binding of complementary DNA strands. These features, and the ability to create DNA strands with any desired sequence of bases, have led to the use of DNA rationally to design various nanostructures and even execute molecular computations. Of the wide range of self-assembled DNA nanostructures reported, most are one- or two-dimensional. Examples of three-dimensional DNA structures include cubes, truncated octahedra, octohedra and tetrahedra, which are all comprised of many different DNA strands with unique sequences. When aiming for large structures, the need to synthesize large numbers (hundreds) of unique DNA strands poses a challenging design problem. Here, we demonstrate a simple solution to this problem: the design of basic DNA building units in such a way that many copies of identical units assemble into larger three-dimensional structures. We test this hierarchical self-assembly concept with DNA molecules that form three-point-star motifs, or tiles. By controlling the flexibility and concentration of the tiles, the one-pot assembly yields tetrahedra, dodecahedra or buckyballs that are tens of nanometres in size and comprised of four, twenty or sixty individual tiles, respectively. We expect that our assembly strategy can be adapted to allow the fabrication of a range of relatively complex three-dimensional structures.

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Year:  2008        PMID: 18337818     DOI: 10.1038/nature06597

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  187 in total

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Journal:  Nature       Date:  2012-05-30       Impact factor: 49.962

2.  Programmable shape-shifting micelles.

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3.  Algorithmic design of self-folding polyhedra.

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4.  Modeling and design by hierarchical natural moves.

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Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-23       Impact factor: 11.205

5.  Temperature-assisted cyclic hybridization (TACH): an improved method for supercoiled DNA hybridization.

Authors:  Iulian I Oprea; Oscar E Simonson; Pedro M D Moreno; Joana R Viola; Karin E Lundin; C I Edvard Smith
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6.  Nanotribology results show that DNA forms a mechanically resistant 2D network in metaphase chromatin plates.

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Review 7.  Spatially-interactive biomolecular networks organized by nucleic acid nanostructures.

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Journal:  Acc Chem Res       Date:  2012-05-29       Impact factor: 22.384

8.  Automated Sequence Design of 3D Polyhedral Wireframe DNA Origami with Honeycomb Edges.

Authors:  Hyungmin Jun; Tyson R Shepherd; Kaiming Zhang; William P Bricker; Shanshan Li; Wah Chiu; Mark Bathe
Journal:  ACS Nano       Date:  2019-01-24       Impact factor: 15.881

9.  Square-shaped RNA particles from different RNA folds.

Authors:  Isil Severcan; Cody Geary; Erik Verzemnieks; Arkadiusz Chworos; Luc Jaeger
Journal:  Nano Lett       Date:  2009-03       Impact factor: 11.189

10.  Intra- and intermolecular self-assembly of a 20-nm-wide supramolecular hexagonal grid.

Authors:  Zhe Zhang; Yiming Li; Bo Song; Yuan Zhang; Xin Jiang; Ming Wang; Ryan Tumbleson; Changlin Liu; Pingshan Wang; Xin-Qi Hao; Tomas Rojas; Anh T Ngo; Jonathan L Sessler; George R Newkome; Saw Wai Hla; Xiaopeng Li
Journal:  Nat Chem       Date:  2020-04-13       Impact factor: 24.427

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