Literature DB >> 30970183

Dynamic DNA Structures.

Yingwei Zhang1,2, Victor Pan3, Xue Li1, Xueqin Yang1, Haofei Li1, Pengfei Wang1, Yonggang Ke3.   

Abstract

Dynamic DNA structures, a type of DNA construct built using programmable DNA self-assembly, have the capability to reconfigure their conformations in response to environmental stimulation. A general strategy to design dynamic DNA structures is to integrate reconfigurable elements into conventional static DNA structures that may be assembled from a variety of methods including DNA origami and DNA tiles. Commonly used reconfigurable elements range from strand displacement reactions, special structural motifs, target-binding DNA aptamers, and base stacking components, to DNA conformational change domains, etc. Morphological changes of dynamic DNA structures may be visualized by imaging techniques or may be translated to other detectable readout signals (e.g., fluorescence). Owing to their programmable capability of recognizing environmental cues with high specificity, dynamic DNA structures embody the epitome of robust and versatile systems that hold great promise in sensing and imaging biological analytes, in delivering molecular cargos, and in building programmable systems that are able to conduct sophisticated tasks.
© 2019 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  DNA walkers and circuits; dynamic DNA structures; nanorobotic transportation of molecular cargos; self-assembly; sensing and imaging

Year:  2019        PMID: 30970183      PMCID: PMC7252325          DOI: 10.1002/smll.201900228

Source DB:  PubMed          Journal:  Small        ISSN: 1613-6810            Impact factor:   13.281


  65 in total

1.  The single-step synthesis of a DNA tetrahedron.

Authors:  Russell P Goodman; Richard M Berry; Andrew J Turberfield
Journal:  Chem Commun (Camb)       Date:  2004-05-20       Impact factor: 6.222

2.  Aptamers evolved from live cells as effective molecular probes for cancer study.

Authors:  Dihua Shangguan; Ying Li; Zhiwen Tang; Zehui Charles Cao; Hui William Chen; Prabodhika Mallikaratchy; Kwame Sefah; Chaoyong James Yang; Weihong Tan
Journal:  Proc Natl Acad Sci U S A       Date:  2006-07-27       Impact factor: 11.205

3.  Highly connected two-dimensional crystals of DNA six-point-stars.

Authors:  Yu He; Ye Tian; Alexander E Ribbe; Chengde Mao
Journal:  J Am Chem Soc       Date:  2006-12-20       Impact factor: 15.419

4.  A DNA nanomachine that maps spatial and temporal pH changes inside living cells.

Authors:  Souvik Modi; Swetha M G; Debanjan Goswami; Gagan D Gupta; Satyajit Mayor; Yamuna Krishnan
Journal:  Nat Nanotechnol       Date:  2009-04-06       Impact factor: 39.213

5.  Dynamic DNA devices and assemblies formed by shape-complementary, non-base pairing 3D components.

Authors:  Thomas Gerling; Klaus F Wagenbauer; Andrea M Neuner; Hendrik Dietz
Journal:  Science       Date:  2015-03-27       Impact factor: 47.728

Review 6.  DNA Origami: Scaffolds for Creating Higher Order Structures.

Authors:  Fan Hong; Fei Zhang; Yan Liu; Hao Yan
Journal:  Chem Rev       Date:  2017-06-12       Impact factor: 60.622

7.  DNA sequence-directed shape change of photopatterned hydrogels via high-degree swelling.

Authors:  Angelo Cangialosi; ChangKyu Yoon; Jiayu Liu; Qi Huang; Jingkai Guo; Thao D Nguyen; David H Gracias; Rebecca Schulman
Journal:  Science       Date:  2017-09-15       Impact factor: 47.728

8.  Gigadalton-scale shape-programmable DNA assemblies.

Authors:  Klaus F Wagenbauer; Christian Sigl; Hendrik Dietz
Journal:  Nature       Date:  2017-12-06       Impact factor: 49.962

9.  Folding DNA into twisted and curved nanoscale shapes.

Authors:  Hendrik Dietz; Shawn M Douglas; William M Shih
Journal:  Science       Date:  2009-08-07       Impact factor: 47.728

10.  A light-driven three-dimensional plasmonic nanosystem that translates molecular motion into reversible chiroptical function.

Authors:  Anton Kuzyk; Yangyang Yang; Xiaoyang Duan; Simon Stoll; Alexander O Govorov; Hiroshi Sugiyama; Masayuki Endo; Na Liu
Journal:  Nat Commun       Date:  2016-02-02       Impact factor: 14.919

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  7 in total

1.  Design Approaches and Computational Tools for DNA Nanostructures.

Authors:  Heeyuen Koh; Jae Gyung Lee; Jae Young Lee; Ryan Kim; Osamu Tabata; Kim Jin-Woo; DO-Nyun Kim
Journal:  IEEE Open J Nanotechnol       Date:  2021-10-14

2.  Development of Fluorescent Aptasensors Based on G-Quadruplex Quenching Ability for Ochratoxin A and Potassium Ions Detection.

Authors:  Cheng Yang; Xiaolin Chu; Li Zeng; Amina Rhouati; Fathimath Abbas; Shengnan Cui; Daiqin Lin
Journal:  Biosensors (Basel)       Date:  2022-06-16

Review 3.  Robotic DNA Nanostructures.

Authors:  Sami Nummelin; Boxuan Shen; Petteri Piskunen; Qing Liu; Mauri A Kostiainen; Veikko Linko
Journal:  ACS Synth Biol       Date:  2020-07-12       Impact factor: 5.110

4.  Water-in-Water Droplets Selectively Uptake Self-Assembled DNA Nano/Microstructures: a Versatile Method for Purification in DNA Nanotechnology.

Authors:  Marcos K Masukawa; Yusuke Sato; Fujio Yu; Kanta Tsumoto; Kenichi Yoshikawa; Masahiro Takinoue
Journal:  Chembiochem       Date:  2022-07-01       Impact factor: 3.461

5.  A nanoscale DNA force spectrometer capable of applying tension and compression on biomolecules.

Authors:  Yuchen Wang; Jenny V Le; Kyle Crocker; Michael A Darcy; Patrick D Halley; Dengke Zhao; Nick Andrioff; Cassie Croy; Michael G Poirier; Ralf Bundschuh; Carlos E Castro
Journal:  Nucleic Acids Res       Date:  2021-09-07       Impact factor: 19.160

Review 6.  Rationally Designed DNA Nanostructures for Drug Delivery.

Authors:  Fan Xu; Qing Xia; Pengfei Wang
Journal:  Front Chem       Date:  2020-09-24       Impact factor: 5.221

7.  Asymmetric patterning drives the folding of a tripodal DNA nanotweezer.

Authors:  Daniel Saliba; Tuan Trinh; Christophe Lachance-Brais; Alexander L Prinzen; Felix J Rizzuto; Donatien de Rochambeau; Hanadi F Sleiman
Journal:  Chem Sci       Date:  2021-11-16       Impact factor: 9.825

  7 in total

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