Literature DB >> 26165156

Modularity of RiPP Enzymes Enables Designed Synthesis of Decorated Peptides.

Debosmita Sardar1, Zhenjian Lin1, Eric W Schmidt2.   

Abstract

Macrocyclases and other posttranslational enzymes afford derived peptides with improved properties for pharmaceutical and biotechnological applications. Here, we asked whether multiple posttranslational modifications could be simultaneously controlled and matched to rationally generate new peptide derivatives. We reconstituted the cyanobactin peptide natural products in vitro with up to five different posttranslational enzymes in a single tube. By manipulating the order of addition and identity of enzymes and exploiting their broad-substrate tolerance, we engineered the production of highly unnatural derivatives, including an N-C peptide macrocycle of 22 amino acids in length. In addition to engineering, this work better defines the macrocyclization mechanism, provides the first biochemical demonstration of Ser/Thr posttranslational prenylation, and is the first example of reconstitution of a native, multistep RiPP pathway with multiple enzymes in one pot. Overall, this work demonstrates how the modularity of posttranslational modification enzymes can be used to design and synthesize desirable peptide motifs.
Copyright © 2015 Elsevier Ltd. All rights reserved.

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Year:  2015        PMID: 26165156      PMCID: PMC4522240          DOI: 10.1016/j.chembiol.2015.06.014

Source DB:  PubMed          Journal:  Chem Biol        ISSN: 1074-5521


  42 in total

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Journal:  J Bacteriol       Date:  2003-12       Impact factor: 3.490

2.  Different active-site loop orientation in serine hydrolases versus acyltransferases.

Authors:  Yun Jiang; Krista L Morley; Joseph D Schrag; Romas J Kazlauskas
Journal:  Chembiochem       Date:  2011-02-23       Impact factor: 3.164

3.  Characterization of the biosynthetic gene cluster for the ribosomally synthesized cyclic peptide ustiloxin B in Aspergillus flavus.

Authors:  Myco Umemura; Nozomi Nagano; Hideaki Koike; Jin Kawano; Tomoko Ishii; Yuki Miyamura; Moto Kikuchi; Koichi Tamano; Jiujiang Yu; Kazuo Shin-ya; Masayuki Machida
Journal:  Fungal Genet Biol       Date:  2014-05-16       Impact factor: 3.495

4.  Circular logic: nonribosomal peptide-like macrocyclization with a ribosomal peptide catalyst.

Authors:  John A McIntosh; Charles R Robertson; Vinayak Agarwal; Satish K Nair; Grzegorz W Bulaj; Eric W Schmidt
Journal:  J Am Chem Soc       Date:  2010-11-10       Impact factor: 15.419

5.  Ustiloxins, fungal cyclic peptides, are ribosomally synthesized in Ustilaginoidea virens.

Authors:  Takahiro Tsukui; Nozomi Nagano; Myco Umemura; Toshitaka Kumagai; Goro Terai; Masayuki Machida; Kiyoshi Asai
Journal:  Bioinformatics       Date:  2014-11-19       Impact factor: 6.937

6.  Peptide macrocyclization catalyzed by a prolyl oligopeptidase involved in α-amanitin biosynthesis.

Authors:  Hong Luo; Sung-Yong Hong; R Michael Sgambelluri; Evan Angelos; Xuan Li; Jonathan D Walton
Journal:  Chem Biol       Date:  2014-12-04

7.  Assessing the combinatorial potential of the RiPP cyanobactin tru pathway.

Authors:  Duane E Ruffner; Eric W Schmidt; John R Heemstra
Journal:  ACS Synth Biol       Date:  2014-09-02       Impact factor: 5.110

8.  An efficient method for the in vitro production of azol(in)e-based cyclic peptides.

Authors:  Wael E Houssen; Andrew F Bent; Andrew R McEwan; Nathalie Pieiller; Jioji Tabudravu; Jesko Koehnke; Greg Mann; Rosemary I Adaba; Louise Thomas; Usama W Hawas; Huanting Liu; Ulrich Schwarz-Linek; Margaret C M Smith; James H Naismith; Marcel Jaspars
Journal:  Angew Chem Int Ed Engl       Date:  2014-10-21       Impact factor: 15.336

9.  Recognition sequences and substrate evolution in cyanobactin biosynthesis.

Authors:  Debosmita Sardar; Elizabeth Pierce; John A McIntosh; Eric W Schmidt
Journal:  ACS Synth Biol       Date:  2014-03-26       Impact factor: 5.110

10.  Enzyme-catalyzed macrocyclization of long unprotected peptides.

Authors:  Chi Zhang; Peng Dai; Alexander M Spokoyny; Bradley L Pentelute
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  51 in total

1.  Metabolic model for diversity-generating biosynthesis.

Authors:  Ma Diarey Tianero; Elizabeth Pierce; Shrinivasan Raghuraman; Debosmita Sardar; John A McIntosh; John R Heemstra; Zachary Schonrock; Brett C Covington; J Alan Maschek; James E Cox; Brian O Bachmann; Baldomero M Olivera; Duane E Ruffner; Eric W Schmidt
Journal:  Proc Natl Acad Sci U S A       Date:  2016-02-01       Impact factor: 11.205

2.  Post-Translational Tyrosine Geranylation in Cyanobactin Biosynthesis.

Authors:  Maho Morita; Yue Hao; Jouni K Jokela; Debosmita Sardar; Zhenjian Lin; Kaarina Sivonen; Satish K Nair; Eric W Schmidt
Journal:  J Am Chem Soc       Date:  2018-05-01       Impact factor: 15.419

3.  Enzymatic N- and C-Protection in Cyanobactin RiPP Natural Products.

Authors:  Debosmita Sardar; Yue Hao; Zhenjian Lin; Maho Morita; Satish K Nair; Eric W Schmidt
Journal:  J Am Chem Soc       Date:  2017-02-15       Impact factor: 15.419

4.  Characterization of the macrocyclase involved in the biosynthesis of RiPP cyclic peptides in plants.

Authors:  Jonathan R Chekan; Paola Estrada; Patrick S Covello; Satish K Nair
Journal:  Proc Natl Acad Sci U S A       Date:  2017-06-05       Impact factor: 11.205

5.  Directing Biosynthesis: Practical Supply of Natural and Unnatural Cyanobactins.

Authors:  D Sardar; M D Tianero; E W Schmidt
Journal:  Methods Enzymol       Date:  2016-03-16       Impact factor: 1.600

6.  In Vitro Biosynthesis and Substrate Tolerance of the Plantazolicin Family of Natural Products.

Authors:  Caitlin D Deane; Brandon J Burkhart; Patricia M Blair; Jonathan I Tietz; Alice Lin; Douglas A Mitchell
Journal:  ACS Chem Biol       Date:  2016-06-16       Impact factor: 5.100

7.  Expanding the chemical space of synthetic cyclic peptides using a promiscuous macrocyclase from prenylagaramide biosynthesis.

Authors:  Snigdha Sarkar; Wenjia Gu; Eric W Schmidt
Journal:  ACS Catal       Date:  2020-06-17       Impact factor: 13.084

Review 8.  Methanobactins: Maintaining copper homeostasis in methanotrophs and beyond.

Authors:  Grace E Kenney; Amy C Rosenzweig
Journal:  J Biol Chem       Date:  2018-01-18       Impact factor: 5.157

9.  Substrate Recognition by the Class II Lanthipeptide Synthetase HalM2.

Authors:  Imran R Rahman; Jeella Z Acedo; Xiaoran Roger Liu; Lingyang Zhu; Justine Arrington; Michael L Gross; Wilfred A van der Donk
Journal:  ACS Chem Biol       Date:  2020-04-28       Impact factor: 5.100

10.  Flexizyme-Enabled Benchtop Biosynthesis of Thiopeptides.

Authors:  Steven R Fleming; Tessa E Bartges; Alexander A Vinogradov; Christine L Kirkpatrick; Yuki Goto; Hiroaki Suga; Leslie M Hicks; Albert A Bowers
Journal:  J Am Chem Soc       Date:  2019-01-08       Impact factor: 15.419

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