Literature DB >> 26085659

The emerging role of RNA editing in plasticity.

Joshua J C Rosenthal1.   

Abstract

All true metazoans modify their RNAs by converting specific adenosine residues to inosine. Because inosine binds to cytosine, it is a biological mimic for guanosine. This subtle change, termed RNA editing, can have diverse effects on various RNA-mediated cellular pathways, including RNA interference, innate immunity, retrotransposon defense and messenger RNA recoding. Because RNA editing can be regulated, it is an ideal tool for increasing genetic diversity, adaptation and environmental acclimation. This review will cover the following themes related to RNA editing: (1) how it is used to modify different cellular RNAs, (2) how frequently it is used by different organisms to recode mRNA, (3) how specific recoding events regulate protein function, (4) how it is used in adaptation and (5) emerging evidence that it can be used for acclimation. Organismal biologists with an interest in adaptation and acclimation, but with little knowledge of RNA editing, are the intended audience.
© 2015. Published by The Company of Biologists Ltd.

Entities:  

Keywords:  ADAR; Acclimation; Adaptation; RNA modifications; RNA processing

Mesh:

Substances:

Year:  2015        PMID: 26085659      PMCID: PMC4487009          DOI: 10.1242/jeb.119065

Source DB:  PubMed          Journal:  J Exp Biol        ISSN: 0022-0949            Impact factor:   3.312


  128 in total

1.  Large-scale DNA editing of retrotransposons accelerates mammalian genome evolution.

Authors:  Shai Carmi; George M Church; Erez Y Levanon
Journal:  Nat Commun       Date:  2011-11-01       Impact factor: 14.919

2.  Extra double-stranded RNA binding domain (dsRBD) in a squid RNA editing enzyme confers resistance to high salt environment.

Authors:  Juan Pablo Palavicini; Rodrigo A Correa-Rojas; Joshua J C Rosenthal
Journal:  J Biol Chem       Date:  2012-03-28       Impact factor: 5.157

3.  RNA editing of the IQ domain in Ca(v)1.3 channels modulates their Ca²⁺-dependent inactivation.

Authors:  Hua Huang; Bao Zhen Tan; Yiru Shen; Jin Tao; Fengli Jiang; Ying Ying Sung; Choon Keow Ng; Manfred Raida; Georg Köhr; Miyoko Higuchi; Hadi Fatemi-Shariatpanahi; Bradley Harden; David T Yue; Tuck Wah Soong
Journal:  Neuron       Date:  2012-01-26       Impact factor: 17.173

4.  Auto-regulatory RNA editing fine-tunes mRNA re-coding and complex behaviour in Drosophila.

Authors:  Yiannis A Savva; James E C Jepson; Asli Sahin; Arthur U Sugden; Jacquelyn S Dorsky; Lauren Alpert; Charles Lawrence; Robert A Reenan
Journal:  Nat Commun       Date:  2012-04-24       Impact factor: 14.919

Review 5.  Nuclear Editing of mRNA 3'-UTRs.

Authors:  Ling-Ling Chen; Gordon G Carmichael
Journal:  Curr Top Microbiol Immunol       Date:  2012       Impact factor: 4.291

6.  NEIL1 binding to DNA containing 2'-fluorothymidine glycol stereoisomers and the effect of editing.

Authors:  Kazumitsu Onizuka; Jongchan Yeo; Sheila S David; Peter A Beal
Journal:  Chembiochem       Date:  2012-05-25       Impact factor: 3.164

7.  RNA editing underlies temperature adaptation in K+ channels from polar octopuses.

Authors:  Sandra Garrett; Joshua J C Rosenthal
Journal:  Science       Date:  2012-01-05       Impact factor: 47.728

8.  Profound downregulation of the RNA editing enzyme ADAR2 in ALS spinal motor neurons.

Authors:  Takuto Hideyama; Takenari Yamashita; Hitoshi Aizawa; Shoji Tsuji; Akiyoshi Kakita; Hitoshi Takahashi; Shin Kwak
Journal:  Neurobiol Dis       Date:  2011-12-28       Impact factor: 5.996

9.  Accurate identification of human Alu and non-Alu RNA editing sites.

Authors:  Gokul Ramaswami; Wei Lin; Robert Piskol; Meng How Tan; Carrie Davis; Jin Billy Li
Journal:  Nat Methods       Date:  2012-04-04       Impact factor: 28.547

10.  Nascent-seq indicates widespread cotranscriptional RNA editing in Drosophila.

Authors:  Joseph Rodriguez; Jerome S Menet; Michael Rosbash
Journal:  Mol Cell       Date:  2012-05-31       Impact factor: 17.970

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  29 in total

Review 1.  Discrimination of Self and Non-Self Ribonucleic Acids.

Authors:  Anna Gebhardt; Beatrice T Laudenbach; Andreas Pichlmair
Journal:  J Interferon Cytokine Res       Date:  2017-05       Impact factor: 2.607

Review 2.  mRNA Editing, Processing and Quality Control in Caenorhabditis elegans.

Authors:  Joshua A Arribere; Hidehito Kuroyanagi; Heather A Hundley
Journal:  Genetics       Date:  2020-07       Impact factor: 4.562

Review 3.  A-to-I RNA editing - immune protector and transcriptome diversifier.

Authors:  Eli Eisenberg; Erez Y Levanon
Journal:  Nat Rev Genet       Date:  2018-08       Impact factor: 53.242

4.  Adenosine Deaminase That Acts on RNA 3 (ADAR3) Binding to Glutamate Receptor Subunit B Pre-mRNA Inhibits RNA Editing in Glioblastoma.

Authors:  Eimile Oakes; Ashley Anderson; Aaron Cohen-Gadol; Heather A Hundley
Journal:  J Biol Chem       Date:  2017-02-06       Impact factor: 5.157

Review 5.  A-to-I editing of coding and non-coding RNAs by ADARs.

Authors:  Kazuko Nishikura
Journal:  Nat Rev Mol Cell Biol       Date:  2015-12-09       Impact factor: 94.444

Review 6.  RNA-binding proteins, neural development and the addictions.

Authors:  C D Bryant; N Yazdani
Journal:  Genes Brain Behav       Date:  2016-01       Impact factor: 3.449

7.  The complete chloroplast genomes of two species in threatened monocot genus Caldesia in China.

Authors:  Virginia M Mwanzia; John M Nzei; Dong-Ying Yan; Peris W Kamau; Jin-Ming Chen; Zhi-Zhong Li
Journal:  Genetica       Date:  2019-10-25       Impact factor: 1.082

Review 8.  To protect and modify double-stranded RNA - the critical roles of ADARs in development, immunity and oncogenesis.

Authors:  Emily A Erdmann; Ananya Mahapatra; Priyanka Mukherjee; Boyoon Yang; Heather A Hundley
Journal:  Crit Rev Biochem Mol Biol       Date:  2020-12-27       Impact factor: 8.250

9.  Quantitative Analysis of Adenosine-to-Inosine RNA Editing.

Authors:  Turnee N Malik; Jean-Philippe Cartailler; Ronald B Emeson
Journal:  Methods Mol Biol       Date:  2021

10.  Regulation of RNA editing by intracellular acidification.

Authors:  Turnee N Malik; Erin E Doherty; Vandana M Gaded; Theodore M Hill; Peter A Beal; Ronald B Emeson
Journal:  Nucleic Acids Res       Date:  2021-04-19       Impact factor: 16.971

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