Literature DB >> 22531175

Auto-regulatory RNA editing fine-tunes mRNA re-coding and complex behaviour in Drosophila.

Yiannis A Savva1, James E C Jepson, Asli Sahin, Arthur U Sugden, Jacquelyn S Dorsky, Lauren Alpert, Charles Lawrence, Robert A Reenan.   

Abstract

Auto-regulatory feedback loops are a common molecular strategy used to optimize protein function. In Drosophila, many messenger RNAs involved in neuro-transmission are re-coded at the RNA level by the RNA-editing enzyme, dADAR, leading to the incorporation of amino acids that are not directly encoded by the genome. dADAR also re-codes its own transcript, but the consequences of this auto-regulation in vivo are unclear. Here we show that hard-wiring or abolishing endogenous dADAR auto-regulation dramatically remodels the landscape of re-coding events in a site-specific manner. These molecular phenotypes correlate with altered localization of dADAR within the nuclear compartment. Furthermore, auto-editing exhibits sexually dimorphic patterns of spatial regulation and can be modified by abiotic environmental factors. Finally, we demonstrate that modifying dAdar auto-editing affects adaptive complex behaviours. Our results reveal the in vivo relevance of auto-regulatory control over post-transcriptional mRNA re-coding events in fine-tuning brain function and organismal behaviour.

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Year:  2012        PMID: 22531175      PMCID: PMC4017936          DOI: 10.1038/ncomms1789

Source DB:  PubMed          Journal:  Nat Commun        ISSN: 2041-1723            Impact factor:   14.919


  34 in total

1.  Point mutation in an AMPA receptor gene rescues lethality in mice deficient in the RNA-editing enzyme ADAR2.

Authors:  M Higuchi; S Maas; F N Single; J Hartner; A Rozov; N Burnashev; D Feldmeyer; R Sprengel; P H Seeburg
Journal:  Nature       Date:  2000-07-06       Impact factor: 49.962

2.  The fate of dsRNA in the nucleus: a p54(nrb)-containing complex mediates the nuclear retention of promiscuously A-to-I edited RNAs.

Authors:  Z Zhang; G G Carmichael
Journal:  Cell       Date:  2001-08-24       Impact factor: 41.582

Review 3.  RNA editing by adenosine deaminases that act on RNA.

Authors:  Brenda L Bass
Journal:  Annu Rev Biochem       Date:  2001-11-09       Impact factor: 23.643

4.  Visualizing adenosine-to-inosine RNA editing in the Drosophila nervous system.

Authors:  James E C Jepson; Yiannis A Savva; Kyle A Jay; Robert A Reenan
Journal:  Nat Methods       Date:  2011-12-25       Impact factor: 28.547

5.  dADAR, a Drosophila double-stranded RNA-specific adenosine deaminase is highly developmentally regulated and is itself a target for RNA editing.

Authors:  M J Palladino; L P Keegan; M A O'Connell; R A Reenan
Journal:  RNA       Date:  2000-07       Impact factor: 4.942

6.  RNA editing of the Drosophila para Na(+) channel transcript. Evolutionary conservation and developmental regulation.

Authors:  C J Hanrahan; M J Palladino; B Ganetzky; R A Reenan
Journal:  Genetics       Date:  2000-07       Impact factor: 4.562

7.  A-to-I pre-mRNA editing in Drosophila is primarily involved in adult nervous system function and integrity.

Authors:  M J Palladino; L P Keegan; M A O'Connell; R A Reenan
Journal:  Cell       Date:  2000-08-18       Impact factor: 41.582

8.  Targeted mutagenesis by homologous recombination in D. melanogaster.

Authors:  Yikang S Rong; Simon W Titen; Heng B Xie; Mary M Golic; Michael Bastiani; Pradip Bandyopadhyay; Baldomero M Olivera; Michael Brodsky; Gerald M Rubin; Kent G Golic
Journal:  Genes Dev       Date:  2002-06-15       Impact factor: 11.361

9.  Novel putative nicotinic acetylcholine receptor subunit genes, Dalpha5, Dalpha6 and Dalpha7, in Drosophila melanogaster identify a new and highly conserved target of adenosine deaminase acting on RNA-mediated A-to-I pre-mRNA editing.

Authors:  M Grauso; R A Reenan; E Culetto; D B Sattelle
Journal:  Genetics       Date:  2002-04       Impact factor: 4.562

10.  The developmental transcriptome of Drosophila melanogaster.

Authors:  Brenton R Graveley; Angela N Brooks; Joseph W Carlson; Michael O Duff; Jane M Landolin; Li Yang; Carlo G Artieri; Marijke J van Baren; Nathan Boley; Benjamin W Booth; James B Brown; Lucy Cherbas; Carrie A Davis; Alex Dobin; Renhua Li; Wei Lin; John H Malone; Nicolas R Mattiuzzo; David Miller; David Sturgill; Brian B Tuch; Chris Zaleski; Dayu Zhang; Marco Blanchette; Sandrine Dudoit; Brian Eads; Richard E Green; Ann Hammonds; Lichun Jiang; Phil Kapranov; Laura Langton; Norbert Perrimon; Jeremy E Sandler; Kenneth H Wan; Aarron Willingham; Yu Zhang; Yi Zou; Justen Andrews; Peter J Bickel; Steven E Brenner; Michael R Brent; Peter Cherbas; Thomas R Gingeras; Roger A Hoskins; Thomas C Kaufman; Brian Oliver; Susan E Celniker
Journal:  Nature       Date:  2010-12-22       Impact factor: 49.962

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  23 in total

1.  Genome-wide analysis of A-to-I RNA editing by single-molecule sequencing in Drosophila.

Authors:  Georges St Laurent; Michael R Tackett; Sergey Nechkin; Dmitry Shtokalo; Denis Antonets; Yiannis A Savva; Rachel Maloney; Philipp Kapranov; Charles E Lawrence; Robert A Reenan
Journal:  Nat Struct Mol Biol       Date:  2013-09-29       Impact factor: 15.369

2.  RNA editing regulates transposon-mediated heterochromatic gene silencing.

Authors:  Yiannis A Savva; James E C Jepson; Yao-Jen Chang; Rachel Whitaker; Brian C Jones; Georges St Laurent; Michael R Tackett; Philipp Kapranov; Nan Jiang; Guyu Du; Stephen L Helfand; Robert A Reenan
Journal:  Nat Commun       Date:  2013       Impact factor: 14.919

Review 3.  The emerging role of RNA editing in plasticity.

Authors:  Joshua J C Rosenthal
Journal:  J Exp Biol       Date:  2015-06       Impact factor: 3.312

4.  A-to-I RNA editing is developmentally regulated and generally adaptive for sexual reproduction in Neurospora crassa.

Authors:  Huiquan Liu; Yang Li; Daipeng Chen; Zhaomei Qi; Qinhu Wang; Jianhua Wang; Cong Jiang; Jin-Rong Xu
Journal:  Proc Natl Acad Sci U S A       Date:  2017-08-28       Impact factor: 11.205

5.  Cis regulatory effects on A-to-I RNA editing in related Drosophila species.

Authors:  Anne L Sapiro; Patricia Deng; Rui Zhang; Jin Billy Li
Journal:  Cell Rep       Date:  2015-04-23       Impact factor: 9.423

Review 6.  A role for A-to-I RNA editing in temperature adaptation.

Authors:  Sandra C Garrett; Joshua J C Rosenthal
Journal:  Physiology (Bethesda)       Date:  2012-12

7.  Probing RNA recognition by human ADAR2 using a high-throughput mutagenesis method.

Authors:  Yuru Wang; Peter A Beal
Journal:  Nucleic Acids Res       Date:  2016-09-09       Impact factor: 16.971

8.  Natural Populations of Drosophila melanogaster Reveal Features of an Uncharacterized Circadian Property: The Lower Temperature Limit of Rhythmicity.

Authors:  Sarah E Maguire; Paul S Schmidt; Amita Sehgal
Journal:  J Biol Rhythms       Date:  2014-06-10       Impact factor: 3.182

Review 9.  The ADAR protein family.

Authors:  Yiannis A Savva; Leila E Rieder; Robert A Reenan
Journal:  Genome Biol       Date:  2012-12-28       Impact factor: 13.583

10.  The ADAR RNA editing enzyme controls neuronal excitability in Drosophila melanogaster.

Authors:  Xianghua Li; Ian M Overton; Richard A Baines; Liam P Keegan; Mary A O'Connell
Journal:  Nucleic Acids Res       Date:  2013-10-16       Impact factor: 16.971

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