Literature DB >> 22223739

RNA editing underlies temperature adaptation in K+ channels from polar octopuses.

Sandra Garrett1, Joshua J C Rosenthal.   

Abstract

To operate in the extreme cold, ion channels from psychrophiles must have evolved structural changes to compensate for their thermal environment. A reasonable assumption would be that the underlying adaptations lie within the encoding genes. Here, we show that delayed rectifier K(+) channel genes from an Antarctic and a tropical octopus encode channels that differ at only four positions and display very similar behavior when expressed in Xenopus oocytes. However, the transcribed messenger RNAs are extensively edited, creating functional diversity. One editing site, which recodes an isoleucine to a valine in the channel's pore, greatly accelerates gating kinetics by destabilizing the open state. This site is extensively edited in both Antarctic and Arctic species, but mostly unedited in tropical species. Thus adenosine-to-inosine RNA editing can respond to the physical environment.

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Year:  2012        PMID: 22223739      PMCID: PMC4219319          DOI: 10.1126/science.1212795

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  33 in total

1.  Extensive editing of mRNAs for the squid delayed rectifier K+ channel regulates subunit tetramerization.

Authors:  Joshua J C Rosenthal; Francisco Bezanilla
Journal:  Neuron       Date:  2002-05-30       Impact factor: 17.173

2.  Subunit stoichiometry of a mammalian K+ channel determined by construction of multimeric cDNAs.

Authors:  E R Liman; J Tytgat; P Hess
Journal:  Neuron       Date:  1992-11       Impact factor: 17.173

3.  An accurate fluorescent assay for quantifying the extent of RNA editing.

Authors:  Loretta M Roberson; Joshua J C Rosenthal
Journal:  RNA       Date:  2006-09-06       Impact factor: 4.942

4.  Currents carried by sodium and potassium ions through the membrane of the giant axon of Loligo.

Authors:  A L HODGKIN; A F HUXLEY
Journal:  J Physiol       Date:  1952-04       Impact factor: 5.182

5.  Impact of Antarctic Circumpolar Current development on late Paleogene ocean structure.

Authors:  Miriam E Katz; Benjamin S Cramer; J R Toggweiler; Gar Esmay; Chengjie Liu; Kenneth G Miller; Yair Rosenthal; Bridget S Wade; James D Wright
Journal:  Science       Date:  2011-05-27       Impact factor: 47.728

6.  Coupling between voltage sensors and activation gate in voltage-gated K+ channels.

Authors:  Zhe Lu; Angela M Klem; Yajamana Ramu
Journal:  J Gen Physiol       Date:  2002-11       Impact factor: 4.086

7.  An unwinding activity that covalently modifies its double-stranded RNA substrate.

Authors:  B L Bass; H Weintraub
Journal:  Cell       Date:  1988-12-23       Impact factor: 41.582

8.  Properties of sodium and potassium channels of the squid giant axon far below 0 degrees C.

Authors:  F Kukita
Journal:  J Membr Biol       Date:  1982       Impact factor: 1.843

9.  Molecular identification of SqKv1A. A candidate for the delayed rectifier K channel in squid giant axon.

Authors:  J J Rosenthal; R G Vickery; W F Gilly
Journal:  J Gen Physiol       Date:  1996-09       Impact factor: 4.086

10.  The developmental transcriptome of Drosophila melanogaster.

Authors:  Brenton R Graveley; Angela N Brooks; Joseph W Carlson; Michael O Duff; Jane M Landolin; Li Yang; Carlo G Artieri; Marijke J van Baren; Nathan Boley; Benjamin W Booth; James B Brown; Lucy Cherbas; Carrie A Davis; Alex Dobin; Renhua Li; Wei Lin; John H Malone; Nicolas R Mattiuzzo; David Miller; David Sturgill; Brian B Tuch; Chris Zaleski; Dayu Zhang; Marco Blanchette; Sandrine Dudoit; Brian Eads; Richard E Green; Ann Hammonds; Lichun Jiang; Phil Kapranov; Laura Langton; Norbert Perrimon; Jeremy E Sandler; Kenneth H Wan; Aarron Willingham; Yu Zhang; Yi Zou; Justen Andrews; Peter J Bickel; Steven E Brenner; Michael R Brent; Peter Cherbas; Thomas R Gingeras; Roger A Hoskins; Thomas C Kaufman; Brian Oliver; Susan E Celniker
Journal:  Nature       Date:  2010-12-22       Impact factor: 49.962

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  92 in total

Review 1.  Parallel Evolution and Lineage-Specific Expansion of RNA Editing in Ctenophores.

Authors:  Andrea B Kohn; Rachel S Sanford; Masa-aki Yoshida; Leonid L Moroz
Journal:  Integr Comp Biol       Date:  2015-06-18       Impact factor: 3.326

Review 2.  The emerging role of RNA editing in plasticity.

Authors:  Joshua J C Rosenthal
Journal:  J Exp Biol       Date:  2015-06       Impact factor: 3.312

3.  RNA editing in eag potassium channels: biophysical consequences of editing a conserved S6 residue.

Authors:  Mary Y Ryan; Rachel Maloney; Jeffrey D Fineberg; Robert A Reenan; Richard Horn
Journal:  Channels (Austin)       Date:  2012-10-12       Impact factor: 2.581

4.  Analysis and design of RNA sequencing experiments for identifying RNA editing and other single-nucleotide variants.

Authors:  Jae-Hyung Lee; Jason K Ang; Xinshu Xiao
Journal:  RNA       Date:  2013-04-18       Impact factor: 4.942

5.  Differential regulation of Arabidopsis plastid gene expression and RNA editing in non-photosynthetic tissues.

Authors:  Ching-Chih Tseng; Chih-Jen Lee; Yi-Ting Chung; Tzu-Ying Sung; Ming-Hsiun Hsieh
Journal:  Plant Mol Biol       Date:  2013-05-06       Impact factor: 4.076

6.  Many parameter sets in a multicompartment model oscillator are robust to temperature perturbations.

Authors:  Jonathan S Caplan; Alex H Williams; Eve Marder
Journal:  J Neurosci       Date:  2014-04-02       Impact factor: 6.167

7.  Alternative applications for distinct RNA sequencing strategies.

Authors:  Leng Han; Kasey C Vickers; David C Samuels; Yan Guo
Journal:  Brief Bioinform       Date:  2014-09-22       Impact factor: 11.622

8.  Highly Efficient Knockout of a Squid Pigmentation Gene.

Authors:  Karen Crawford; Juan F Diaz Quiroz; Kristen M Koenig; Namrata Ahuja; Caroline B Albertin; Joshua J C Rosenthal
Journal:  Curr Biol       Date:  2020-07-30       Impact factor: 10.834

9.  Using multiplex single-base extension typing to screen for mutants defective in RNA editing.

Authors:  Mizuki Takenaka; Axel Brennicke
Journal:  Nat Protoc       Date:  2012-10-04       Impact factor: 13.491

Review 10.  A role for A-to-I RNA editing in temperature adaptation.

Authors:  Sandra C Garrett; Joshua J C Rosenthal
Journal:  Physiology (Bethesda)       Date:  2012-12
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