Literature DB >> 25957757

Increased resolution of aromatic cross peaks using alternate 13C labeling and TROSY.

Alexander G Milbradt1, Haribabu Arthanari, Koh Takeuchi, Andras Boeszoermenyi, Franz Hagn, Gerhard Wagner.   

Abstract

For typical globular proteins, contacts involving aromatic side chains would constitute the largest number of distance constraints that could be used to define the structure of proteins and protein complexes based on NOE contacts. However, the (1)H NMR signals of aromatic side chains are often heavily overlapped, which hampers extensive use of aromatic NOE cross peaks. Some of this overlap can be overcome by recording (13)C-dispersed NOESY spectra. However, the resolution in the carbon dimension is rather low due to the narrow dispersion of the carbon signals, large one-bond carbon-carbon (C-C) couplings, and line broadening due to chemical shift anisotropy (CSA). Although it has been noted that the CSA of aromatic carbons could be used in TROSY experiments for enhancing resolution, this has not been used much in practice because of complications arising from large aromatic one-bond C-C couplings, and 3D or 4D carbon dispersed NOESY are typically recorded at low resolution hampering straightforward peak assignments. Here we show that the aromatic TROSY effect can optimally be used when employing alternate (13)C labeling using 2-(13)C glycerol, 2-(13)C pyruvate, or 3-(13)C pyruvate as the carbon source. With the elimination of the strong one-bond C-C coupling, the TROSY effect can easily be exploited. We show that (1)H-(13)C TROSY spectra of alternately (13)C labeled samples can be recorded at high resolution, and we employ 3D NOESY aromatic-TROSY spectra to obtain valuable intramolecular and intermolecular cross peaks on a protein complex.

Entities:  

Mesh:

Substances:

Year:  2015        PMID: 25957757      PMCID: PMC4782774          DOI: 10.1007/s10858-015-9944-5

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  30 in total

1.  The role of coherence transfer efficiency in design of TROSY-type multidimensional NMR experiments.

Authors:  A Meissner; O W Sørensen
Journal:  J Magn Reson       Date:  1999-08       Impact factor: 2.229

2.  Solution NMR-derived global fold of a monomeric 82-kDa enzyme.

Authors:  Vitali Tugarinov; Wing-Yiu Choy; Vladislav Yu Orekhov; Lewis E Kay
Journal:  Proc Natl Acad Sci U S A       Date:  2005-01-06       Impact factor: 11.205

3.  Protein structure determination from NMR chemical shifts.

Authors:  Andrea Cavalli; Xavier Salvatella; Christopher M Dobson; Michele Vendruscolo
Journal:  Proc Natl Acad Sci U S A       Date:  2007-05-29       Impact factor: 11.205

4.  Consistent blind protein structure generation from NMR chemical shift data.

Authors:  Yang Shen; Oliver Lange; Frank Delaglio; Paolo Rossi; James M Aramini; Gaohua Liu; Alexander Eletsky; Yibing Wu; Kiran K Singarapu; Alexander Lemak; Alexandr Ignatchenko; Cheryl H Arrowsmith; Thomas Szyperski; Gaetano T Montelione; David Baker; Ad Bax
Journal:  Proc Natl Acad Sci U S A       Date:  2008-03-07       Impact factor: 11.205

Review 5.  Deuterium labelling in NMR structural analysis of larger proteins.

Authors:  D M LeMaster
Journal:  Q Rev Biophys       Date:  1990-05       Impact factor: 5.318

6.  Protein structures in solution by nuclear magnetic resonance and distance geometry. The polypeptide fold of the basic pancreatic trypsin inhibitor determined using two different algorithms, DISGEO and DISMAN.

Authors:  G Wagner; W Braun; T F Havel; T Schaumann; N Go; K Wüthrich
Journal:  J Mol Biol       Date:  1987-08-05       Impact factor: 5.469

7.  Protein backbone angle restraints from searching a database for chemical shift and sequence homology.

Authors:  G Cornilescu; F Delaglio; A Bax
Journal:  J Biomol NMR       Date:  1999-03       Impact factor: 2.835

8.  Application of SAIL phenylalanine and tyrosine with alternative isotope-labeling patterns for protein structure determination.

Authors:  Mitsuhiro Takeda; Akira M Ono; Tsutomu Terauchi; Masatsune Kainosho
Journal:  J Biomol NMR       Date:  2009-08-07       Impact factor: 2.835

9.  Biosynthetic 13C labeling of aromatic side chains in proteins for NMR relaxation measurements.

Authors:  Kaare Teilum; Ulrika Brath; Patrik Lundström; Mikael Akke
Journal:  J Am Chem Soc       Date:  2006-03-01       Impact factor: 15.419

10.  An economical method for production of (2)H, (13)CH3-threonine for solution NMR studies of large protein complexes: application to the 670 kDa proteasome.

Authors:  Algirdas Velyvis; Amy M Ruschak; Lewis E Kay
Journal:  PLoS One       Date:  2012-09-11       Impact factor: 3.240

View more
  12 in total

1.  Feasibility of trifluoromethyl TROSY NMR at high magnetic fields.

Authors:  Brittney A Klein; Brian D Sykes
Journal:  J Biomol NMR       Date:  2019-07-02       Impact factor: 2.835

2.  Solution NMR Experiment for Measurement of (15)N-(1)H Residual Dipolar Couplings in Large Proteins and Supramolecular Complexes.

Authors:  Alexander Eletsky; Surya V S R K Pulavarti; Victor Beaumont; Paul Gollnick; Thomas Szyperski
Journal:  J Am Chem Soc       Date:  2015-08-27       Impact factor: 15.419

3.  NMR: an essential structural tool for integrative studies of T cell development, pMHC ligand recognition and TCR mechanobiology.

Authors:  Robert J Mallis; Kristine N Brazin; Jonathan S Duke-Cohan; Wonmuk Hwang; Jia-Huai Wang; Gerhard Wagner; Haribabu Arthanari; Matthew J Lang; Ellis L Reinherz
Journal:  J Biomol NMR       Date:  2019-02-27       Impact factor: 2.835

Review 4.  Emerging solution NMR methods to illuminate the structural and dynamic properties of proteins.

Authors:  Haribabu Arthanari; Koh Takeuchi; Abhinav Dubey; Gerhard Wagner
Journal:  Curr Opin Struct Biol       Date:  2019-07-19       Impact factor: 6.809

5.  Characterizing Fast Conformational Exchange of Aromatic Rings Using Residual Dipolar Couplings: Distinguishing Jumplike Flips from Other Exchange Mechanisms.

Authors:  Matthias Dreydoppel; Mikael Akke; Ulrich Weininger
Journal:  J Phys Chem B       Date:  2022-09-30       Impact factor: 3.466

6.  The precious fluorine on the ring: fluorine NMR for biological systems.

Authors:  Andras Boeszoermenyi; Barbara Ogórek; Akshay Jain; Haribabu Arthanari; Gerhard Wagner
Journal:  J Biomol NMR       Date:  2020-07-10       Impact factor: 2.835

7.  Site-selective 13C labeling of proteins using erythrose.

Authors:  Ulrich Weininger
Journal:  J Biomol NMR       Date:  2017-02-28       Impact factor: 2.835

Review 8.  Late metabolic precursors for selective aromatic residue labeling.

Authors:  Julia Schörghuber; Leonhard Geist; Gerald Platzer; Michael Feichtinger; Marilena Bisaccia; Lukas Scheibelberger; Frederik Weber; Robert Konrat; Roman J Lichtenecker
Journal:  J Biomol NMR       Date:  2018-05-28       Impact factor: 2.835

9.  Structural basis for the antifolding activity of a molecular chaperone.

Authors:  Chengdong Huang; Paolo Rossi; Tomohide Saio; Charalampos G Kalodimos
Journal:  Nature       Date:  2016-08-08       Impact factor: 49.962

10.  Site-selective 13C labeling of histidine and tryptophan using ribose.

Authors:  Ulrich Weininger
Journal:  J Biomol NMR       Date:  2017-08-30       Impact factor: 2.835

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.