Literature DB >> 32651751

The precious fluorine on the ring: fluorine NMR for biological systems.

Andras Boeszoermenyi1,2, Barbara Ogórek3, Akshay Jain4, Haribabu Arthanari4,5, Gerhard Wagner6.   

Abstract

The fluorine-19 nucleus was recognized early to harbor exceptional properties for NMR spectroscopy. With 100% natural abundance, a high gyromagnetic ratio (83% sensitivity compared to 1H), a chemical shift that is extremely sensitive to its surroundings and near total absence in biological systems, it was destined to become a favored NMR probe, decorating small and large molecules. However, after early excitement, where uptake of fluorinated aromatic amino acids was explored in a series of animal studies, 19F-NMR lost popularity, especially in large molecular weight systems, due to chemical shift anisotropy (CSA) induced line broadening at high magnetic fields. Recently, two orthogonal approaches, (i) CF3 labeling and (ii) aromatic 19F-13C labeling leveraging the TROSY (Transverse Relaxation Optimized Spectroscopy) effect have been successfully applied to study large biomolecular systems. In this perspective, we will discuss the fascinating early work with fluorinated aromatic amino acids, which reveals the enormous potential of these non-natural amino acids in biological NMR and the potential of 19F-NMR to characterize protein and nucleic acid structure, function and dynamics in the light of recent developments. Finally, we explore how fluorine NMR might be exploited to implement small molecule or fragment screens that resemble physiological conditions and discuss the opportunity to follow the fate of small molecules in living cells.

Entities:  

Keywords:  4-fluorophenylalanine; Drug discovery; Fluorine NMR; Nucleic acids; Proteins; TROSY

Mesh:

Substances:

Year:  2020        PMID: 32651751      PMCID: PMC7539674          DOI: 10.1007/s10858-020-00331-z

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  115 in total

1.  2-Fluorotyrosine is a valuable but understudied amino acid for protein-observed 19F NMR.

Authors:  Peter D Ycas; Nicole Wagner; Noelle M Olsen; Riqiang Fu; William C K Pomerantz
Journal:  J Biomol NMR       Date:  2019-11-23       Impact factor: 2.835

2.  Population shuffling of protein conformations.

Authors:  Colin A Smith; David Ban; Supriya Pratihar; Karin Giller; Claudia Schwiegk; Bert L de Groot; Stefan Becker; Christian Griesinger; Donghan Lee
Journal:  Angew Chem Int Ed Engl       Date:  2014-11-06       Impact factor: 15.336

3.  m-Fluorotyrosine convulsions and mortality: relationship to catecholamine and citrate metabolism.

Authors:  A Weissman; B K Koe
Journal:  J Pharmacol Exp Ther       Date:  1967-01       Impact factor: 4.030

4.  Approaches to the assignment of (19)F resonances from 3-fluorophenylalanine labeled calmodulin using solution state NMR.

Authors:  Julianne L Kitevski-Leblanc; Ferenc Evanics; R Scott Prosser
Journal:  J Biomol NMR       Date:  2010-04-18       Impact factor: 2.835

5.  19F Dynamic Nuclear Polarization at Fast Magic Angle Spinning for NMR of HIV-1 Capsid Protein Assemblies.

Authors:  Manman Lu; Mingzhang Wang; Ivan V Sergeyev; Caitlin M Quinn; Jochem Struppe; Melanie Rosay; Werner Maas; Angela M Gronenborn; Tatyana Polenova
Journal:  J Am Chem Soc       Date:  2019-04-01       Impact factor: 15.419

6.  Solid state 19F NMR parameters of fluorine-labeled amino acids. Part I: aromatic substituents.

Authors:  Ulrich H N Dürr; Stephan L Grage; Raiker Witter; Anne S Ulrich
Journal:  J Magn Reson       Date:  2007-12-03       Impact factor: 2.229

7.  5-Fluoro pyrimidines: labels to probe DNA and RNA secondary structures by 1D 19F NMR spectroscopy.

Authors:  Barbara Puffer; Christoph Kreutz; Ulrike Rieder; Marc-Olivier Ebert; Robert Konrat; Ronald Micura
Journal:  Nucleic Acids Res       Date:  2009-12       Impact factor: 16.971

8.  Ligand-Based Fluorine NMR Screening: Principles and Applications in Drug Discovery Projects.

Authors:  Claudio Dalvit; Anna Vulpetti
Journal:  J Med Chem       Date:  2018-10-29       Impact factor: 7.446

9.  Dissection of the ion-induced folding of the hammerhead ribozyme using 19F NMR.

Authors:  C Hammann; D G Norman; D M Lilley
Journal:  Proc Natl Acad Sci U S A       Date:  2001-05-01       Impact factor: 11.205

Review 10.  Spotlight on the Ballet of Proteins: The Structural Dynamic Properties of Proteins Illuminated by Solution NMR.

Authors:  Yuji Tokunaga; Thibault Viennet; Haribabu Arthanari; Koh Takeuchi
Journal:  Int J Mol Sci       Date:  2020-03-06       Impact factor: 5.923

View more
  3 in total

1.  Interactions between S100A9 and Alpha-Synuclein: Insight from NMR Spectroscopy.

Authors:  Zigmantas Toleikis; Raitis Bobrovs; Agne Janoniene; Alons Lends; Mantas Ziaunys; Ieva Baronaite; Vytautas Petrauskas; Kristine Kitoka; Vytautas Smirnovas; Kristaps Jaudzems
Journal:  Int J Mol Sci       Date:  2022-06-17       Impact factor: 6.208

2.  Preferential Interactions of a Crowder Protein with the Specific Binding Site of a Native Protein Complex.

Authors:  Xu Dong; Ling-Yun Qin; Zhou Gong; Sanbo Qin; Huan-Xiang Zhou; Chun Tang
Journal:  J Phys Chem Lett       Date:  2022-01-19       Impact factor: 6.475

3.  Modulating co-translational protein folding by rational design and ribosome engineering.

Authors:  Minkoo Ahn; Tomasz Włodarski; Alkistis Mitropoulou; Sammy H S Chan; Haneesh Sidhu; Elena Plessa; Thomas A Becker; Nediljko Budisa; Christopher A Waudby; Roland Beckmann; Anaïs M E Cassaignau; Lisa D Cabrita; John Christodoulou
Journal:  Nat Commun       Date:  2022-07-22       Impact factor: 17.694

  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.