Literature DB >> 15637152

Solution NMR-derived global fold of a monomeric 82-kDa enzyme.

Vitali Tugarinov1, Wing-Yiu Choy, Vladislav Yu Orekhov, Lewis E Kay.   

Abstract

The size of proteins that can be studied by solution NMR spectroscopy has increased significantly because of recent developments in methodology. Important experiments include those that make use of approaches that increase the lifetimes of NMR signals or that define the orientation of internuclear bond vectors with respect to a common molecular frame. The advances in NMR techniques are strongly coupled to isotope labeling methods that increase sensitivity and reduce the complexity of NMR spectra. We show that these developments can be exploited in structural studies of high-molecular-weight, single-polypeptide proteins, and we present the solution global fold of the monomeric 723-residue (82-kDa) enzyme malate synthase G from Escherichia coli, which has been extensively characterized by NMR in the past several years.

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Year:  2005        PMID: 15637152      PMCID: PMC545550          DOI: 10.1073/pnas.0407792102

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  36 in total

1.  Structure of outer membrane protein A transmembrane domain by NMR spectroscopy.

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Journal:  Nat Struct Biol       Date:  2001-04

2.  An isotope labeling strategy for methyl TROSY spectroscopy.

Authors:  Vitali Tugarinov; Lewis E Kay
Journal:  J Biomol NMR       Date:  2004-02       Impact factor: 2.835

3.  The Xplor-NIH NMR molecular structure determination package.

Authors:  Charles D Schwieters; John J Kuszewski; Nico Tjandra; G Marius Clore
Journal:  J Magn Reson       Date:  2003-01       Impact factor: 2.229

4.  MOLMOL: a program for display and analysis of macromolecular structures.

Authors:  R Koradi; M Billeter; K Wüthrich
Journal:  J Mol Graph       Date:  1996-02

5.  Solution structure of an rRNA methyltransferase (ErmAM) that confers macrolide-lincosamide-streptogramin antibiotic resistance.

Authors:  L Yu; A M Petros; A Schnuchel; P Zhong; J M Severin; K Walter; T F Holzman; S W Fesik
Journal:  Nat Struct Biol       Date:  1997-06

6.  Protein backbone angle restraints from searching a database for chemical shift and sequence homology.

Authors:  G Cornilescu; F Delaglio; A Bax
Journal:  J Biomol NMR       Date:  1999-03       Impact factor: 2.835

7.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

8.  The glyoxylate cycle is required for fungal virulence.

Authors:  M C Lorenz; G R Fink
Journal:  Nature       Date:  2001-07-05       Impact factor: 49.962

9.  Structure of the Escherichia coli malate synthase G:pyruvate:acetyl-coenzyme A abortive ternary complex at 1.95 A resolution.

Authors:  David M Anstrom; Karen Kallio; S James Remington
Journal:  Protein Sci       Date:  2003-09       Impact factor: 6.725

10.  Stereospecific nuclear magnetic resonance assignments of the methyl groups of valine and leucine in the DNA-binding domain of the 434 repressor by biosynthetically directed fractional 13C labeling.

Authors:  D Neri; T Szyperski; G Otting; H Senn; K Wüthrich
Journal:  Biochemistry       Date:  1989-09-19       Impact factor: 3.162

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  65 in total

1.  Automated sequence- and stereo-specific assignment of methyl-labeled proteins by paramagnetic relaxation and methyl-methyl nuclear Overhauser enhancement spectroscopy.

Authors:  Vincenzo Venditti; Nicolas L Fawzi; G Marius Clore
Journal:  J Biomol NMR       Date:  2011-09-04       Impact factor: 2.835

2.  Determination of solution structures of proteins up to 40 kDa using CS-Rosetta with sparse NMR data from deuterated samples.

Authors:  Oliver F Lange; Paolo Rossi; Nikolaos G Sgourakis; Yifan Song; Hsiau-Wei Lee; James M Aramini; Asli Ertekin; Rong Xiao; Thomas B Acton; Gaetano T Montelione; David Baker
Journal:  Proc Natl Acad Sci U S A       Date:  2012-06-25       Impact factor: 11.205

3.  High resolution methyl selective ¹³C-NMR of proteins in solution and solid state.

Authors:  Garima Jaipuria; Nitin Prakash Lobo; Divya Shet; Hanudatta S Atreya
Journal:  J Biomol NMR       Date:  2012-07-11       Impact factor: 2.835

4.  Recent Advances in the Application of Solution NMR Spectroscopy to Multi-Span Integral Membrane Proteins.

Authors:  Hak Jun Kim; Stanley C Howell; Wade D Van Horn; Young Ho Jeon; Charles R Sanders
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2009-11-01       Impact factor: 9.795

Review 5.  A community resource of experimental data for NMR / X-ray crystal structure pairs.

Authors:  John K Everett; Roberto Tejero; Sarath B K Murthy; Thomas B Acton; James M Aramini; Michael C Baran; Jordi Benach; John R Cort; Alexander Eletsky; Farhad Forouhar; Rongjin Guan; Alexandre P Kuzin; Hsiau-Wei Lee; Gaohua Liu; Rajeswari Mani; Binchen Mao; Jeffrey L Mills; Alexander F Montelione; Kari Pederson; Robert Powers; Theresa Ramelot; Paolo Rossi; Jayaraman Seetharaman; David Snyder; G V T Swapna; Sergey M Vorobiev; Yibing Wu; Rong Xiao; Yunhuang Yang; Cheryl H Arrowsmith; John F Hunt; Michael A Kennedy; James H Prestegard; Thomas Szyperski; Liang Tong; Gaetano T Montelione
Journal:  Protein Sci       Date:  2015-09-22       Impact factor: 6.725

6.  Accurate determination of leucine and valine side-chain conformations using U-[15N/13C/2H]/[1H-(methine/methyl)-Leu/Val] isotope labeling, NOE pattern recognition, and methine Cgamma-Hgamma/Cbeta-Hbeta residual dipolar couplings: application to the 34-kDa enzyme IIA(chitobiose).

Authors:  Chun Tang; Junji Iwahara; G Marius Clore
Journal:  J Biomol NMR       Date:  2005-10       Impact factor: 2.835

Review 7.  Solution NMR of large molecules and assemblies.

Authors:  Mark P Foster; Craig A McElroy; Carlos D Amero
Journal:  Biochemistry       Date:  2007-01-16       Impact factor: 3.162

8.  13C- 13C NOESY spectra of a 480 kDa protein: solution NMR of ferritin.

Authors:  Manolis Matzapetakis; Paola Turano; Elizabeth C Theil; Ivano Bertini
Journal:  J Biomol NMR       Date:  2007-06-07       Impact factor: 2.835

9.  Refined solution structure of the 82-kDa enzyme malate synthase G from joint NMR and synchrotron SAXS restraints.

Authors:  Alexander Grishaev; Vitali Tugarinov; Lewis E Kay; Jill Trewhella; Ad Bax
Journal:  J Biomol NMR       Date:  2007-11-16       Impact factor: 2.835

10.  Selective 1H- 13C NMR spectroscopy of methyl groups in residually protonated samples of large proteins.

Authors:  Chenyun Guo; Vitali Tugarinov
Journal:  J Biomol NMR       Date:  2009-12-03       Impact factor: 2.835

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