| Literature DB >> 25954818 |
Shi-Xing Luo1, Shan Li2, Xue-Hui Zhang3, Jun-Jing Zhang4, Guang-Hua Long4, Gui-Fu Dong4, Wei Su5, Yan Deng2, Yanqiong Liu2, Jin-Min Zhao5, Xue Qin2.
Abstract
BACKGROUND: Interleukin-16 (IL-16), a pleiotropic cytokine, plays a fundamental role in inflammatory diseases. This study investigates the association between IL-16 polymorphisms and the risk of knee osteoarthritis (OA) in a Chinese population.Entities:
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Year: 2015 PMID: 25954818 PMCID: PMC4425433 DOI: 10.1371/journal.pone.0123442
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Primer sequences and reaction conditions for genotyping IL-16 polymorphisms.
| Polymorphisms | Primer sequence 5’–>3’ | Annealing temperature (℃) | Restriction enzyme | Digestion product length (bp) |
|---|---|---|---|---|
| rs11556218T/G | F: GCTCAGGTTCACAGAGTGTTTCCATA; R: TGTGACAATCACAGCTTGCCTG | 61.0 |
| TT: 147+24; TG: 171+147+24; GG: 171 |
| rs4072111C/T | F: CACTGTGATCCCGGTCCAGTC; R: TTCAGGTACAAACCCAGCCAGC | 67.0 |
| CC:164; CT: 164+140+24; TT:140+24 |
| rs4778889T/C | F: CTCCACACTCAAAGCCTTTTGTTCCTATGA; R: CCATGTCAAAACGGTAGCCTCAAGC | 63.0 |
| TT: 280; TC: 280+246+34; CC: 246+34 |
Demographic characteristics of the study population.
| Variables | Healthy control (n = 147) n(%) | Knee osteoarthritis patients (n = 150) n(%) |
|
|---|---|---|---|
|
| 58.3±9.6 | 59.5±8.9 | 0.13 |
|
| |||
| Male | 51 | 41 | 0.07 |
| Femle | 96 | 109 | |
|
| 23.7 ± 2.5 | 24.2 ± 3.3 | 0.19 |
|
| |||
| No | 118 (80.3%) | 129(86.0%) | 0.187 |
| Yes | 29 (19.7%) | 21(14.0%) | |
|
| |||
| No | 121(82.3%) | 119 (79.3%) | 0.514 |
| Yes | 26 (17.7%) | 31 (20.7%) | |
|
| 36.70±6.72 | 44.32±8.78 | 0.001 |
Distributions of IL-16 SNPs genotypes in each group and logistic regression analyses of associations between these polymorphisms and knee OA risk.
| Genotypes | Overall | Women | Men | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Controls n = 147(%) | OA cases n = 150(%) | OR (95% CI) |
| Controls n = 96 | OA cases n = 109 | OR (95% CI) |
| Controls n = 51 | OA cases n = 41 | OR (95% CI) |
| |
|
| ||||||||||||
| TT | 54 (36.7) | 83(55.3) | 1.00ref | 34 | 61 | 1.00ref | 20 | 22 | 1.00ref | |||
| TG | 75(51.1) | 56(37.3) | 0.69(0.53–0.89) | 0.006 | 51 | 41 | 0.65(0.47–0.89) | 0.011 | 24 | 15 | 0.77(0.52–1.16) | 0.301 |
| GG | 18(12.2) | 11(7.4) | 0.64(0.45–0.90) | 0.042 | 11 | 7 | 0.59(0.37–0.92) | 0.047 | 7 | 4 | 0.75(0.43–1.29) | 0.544 |
| Dominant model | ||||||||||||
| TT | 54 | 83 | 1.00ref | 34 | 61 | 1.00ref | 20 | 22 | 1.00ref | |||
| GG+TG | 93 | 67 | 0.68(0.29–0.87) | 0.002 | 62 | 48 | 0.64(0.46–0.87) | 0.005 | 31 | 19 | 0.79(0.52–1.13) | 0.241 |
| Recessive model | ||||||||||||
| TG+TT | 129 | 139 | 1.00ref | 85 | 102 | 1.00ref | 44 | 37 | 1.00ref | |||
| GG | 18 | 11 | 0.78(0.57–1.06) | 0.219 | 11 | 7 | 0.74(0.50–1.11) | 0.306 | 7 | 4 | 0.85(0.52–1.39) | 0.795 |
| T allele | 183 (62.2) | 222 (74.0) | 1.00ref | 119 | 163 | 1.00ref | 64 | 59 | 1.00ref | |||
| G allele | 111 (37.8) | 78(26.0) | 0.77(0.66–0.90) | 0.003 | 73 | 55 | 0.74(0.60–0.91) | 0.007 | 38 | 23 | 0.84(0.65–1.08) | 0.246 |
|
| ||||||||||||
| CC | 89 (60.5) | 120(80.0) | 1.00ref | 61 | 88 | 1.00ref | 28 | 32 | 1.00ref | |||
| CT | 49(33.3) | 27(18.0) | 0.66(0.53–0.83) | 0.002 | 29 | 19 | 0.68(0.50–0.91) | 0.029 | 20 | 8 | 0.65(0.46–0.93) | 0.048 |
| TT | 9 (6.1) | 3(2.0) | 0.57(0.40–0.82) | 0.027 | 6 | 2 | 0.82(0.30–2.22) | 0.718 | 3 | 1 | 0.62(0.33–1.17) | 0.561 |
| Dominant model | ||||||||||||
| CC | 89 | 120 | 1.00ref | 61 | 88 | 1.00ref | 29 | 32 | 1.00ref | |||
| TT+CT | 58 | 30 | 0.65(0.52–0.80) | <0.001 | 35 | 21 | 0.66(0.50–0.87) | 0.009 | 23 | 9 | 0.66(0.47–0.93) | 0.043 |
| Recessive model | ||||||||||||
| CT+CC | 138 | 147 | 1.00ref | 90 | 107 | 1.00ref | 48 | 40 | 1.00ref | |||
| TT | 9 | 3 | 0.31(0.08–1.18) | 0.071 | 35 | 21 | 0.73(0.57–0.94) | 0.039 | 3 | 1 | 0.73(0.40–1.32) | 0.771 |
| C allele | 227(75.7) | 267(89.0) | 1.00ref | 151 | 195 | 1.00ref | 76 | 72 | 1.00ref | |||
| T allele | 67(23.3) | 33(11.0) | 0.69(0.58–0.81) | <0.001 | 41 | 23 | 0.68(0.55–0.85) | 0.004 | 26 | 10 | 0.71(0.55–0.92) | 0.038 |
|
| ||||||||||||
| TT | 82 (55.8) | 101 (67.3) | 1.00ref | 50 | 71 | 1.00ref | 32 | 30 | 1.00ref | |||
| TC | 56 (38.1) | 43 (28.7) | 0.79(0.63–1.00) | 0.079 | 37 | 35 | 0.80(0.59–1.10) | 0.226 | 19 | 8 | 0.73(0.52–1.03) | 0.158 |
| CC | 9 (6.1) | 6 (4.0) | 0.75(0.48–1.16) | 0.387 | 9 | 3 | 0.55(0.37–0.82) | 0.041 | 0 | 3 | 6.46(0.37–11.62) | 0.248 |
| Dominant model | ||||||||||||
| TT | 82 | 101 | 1.00ref | 50 | 71 | 1.00ref | 32 | 30 | 1.00ref | |||
| CC+TC | 65 | 49 | 0.79(0.63–0.98) | 0.045 | 46 | 38 | 0.76(0.57–1.10) | 0.079 | 19 | 11 | 0.62(0.57–1.17) | 0.403 |
| Recessive model | ||||||||||||
| TT+TC | 138 | 144 | 1.00ref | 87 | 106 | 1.00ref | 51 | 38 | 1.00ref | |||
| CC | 9 | 6 | 0.82(0.53–1.25) | 0.569 | 9 | 3 | 0.60(0.42–0.86) | 0.086 | 0 | 3 | 2.43(0.34–4.54) | 0.170 |
| T allele | 220(74.8) | 245(81.7) | 1.00ref | 137 | 177 | 1.00ref | 83 | 68 | 1.00ref | |||
| C allele | 74(25.2) | 55(18.3) | 0.83(0.69–0.98) | 0.047 | 55 | 41 | 0.76(0.62–0.94) | 0.026 | 19 | 14 | 0.96(0.69–1.32) | 0.936 |
OA, osteoarthritis, OR odds ratio, CI confidence interval, ref reference
Bold indicated the difference was significant.
aAdjusted for age, sex, smoking and drinking status by logistic regression model.
b Adjusted for age, smoking and drinking status by logistic regression model.
Haplotype analysis between the case and control groups.
| Haplotypes | SNPs | Haplotype analyses | ||||
|---|---|---|---|---|---|---|
| rs11556218 | rs4072111 | rs4778889 | Total frequency | OR (95% CI) |
| |
| TCT | T | C | T | 0.58 | 1.00* | — |
| GCT | G | C | T | 0.14 | 1.58 (0.93–2.68) | 0.093 |
| TCC | T | C | C | 0.12 | 1.09 (0.56–2.13) | 0.800 |
| TTT | T | T | T | 0.10 | 3.70 (1.57–8.72) | 0.003 |
| GCC | G | C | C | 0.04 | 6.22 (2.37–16.33) | 0.0004 |
| GTT | G | T | T | 0.04 | 2.73 (0.54–13.87) | 0.230 |
| GTC | G | T | C | 0.01 | 3.72 (0.46–29.96) | 0.220 |