Literature DB >> 31055682

Time-domain signal modelling in multidimensional NMR experiments for estimation of relaxation parameters.

Yevgen Matviychuk1, Mark J Bostock2, Daniel Nietlispach2, Daniel J Holland3.   

Abstract

We present a model-based method for estimation of relaxation parameters from time-domain NMR data specifically suitable for processing data in popular 2D phase-sensitive experiments. Our model is formulated in terms of commutative bicomplex algebra, which allows us to use the complete information available in an NMR signal acquired with principles of quadrature detection without disregarding any of its dimensions. Compared to the traditional intensity-analysis method, our model-based approach offers an important advantage for the analysis of overlapping peaks and is robust over a wide range of signal-to-noise ratios. We assess its performance with simulated experiments and then apply it for determination of [Formula: see text], [Formula: see text], and [Formula: see text] relaxation rates in datasets of a protein with more than 100 cross peaks.

Keywords:  2D –; NMR spectroscopy; Protein NMR; Relaxation analysis; Spectrum reconstruction; Time domain analysis

Mesh:

Year:  2019        PMID: 31055682     DOI: 10.1007/s10858-018-00224-2

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  26 in total

Review 1.  Random sampling in multidimensional NMR spectroscopy.

Authors:  Krzysztof Kazimierczuk; Jan Stanek; Anna Zawadzka-Kazimierczuk; Wiktor Koźmiński
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2010-08-03       Impact factor: 9.795

2.  Structure of the C-terminal domain from Trypanosoma brucei variant surface glycoprotein MITat1.2.

Authors:  Anasuya Chattopadhyay; Nicola G Jones; Daniel Nietlispach; Peter R Nielsen; H Paul Voorheis; Helen R Mott; Mark Carrington
Journal:  J Biol Chem       Date:  2004-11-22       Impact factor: 5.157

Review 3.  Fast time scale dynamics of protein backbones: NMR relaxation methods, applications, and functional consequences.

Authors:  Virginia A Jarymowycz; Martin J Stone
Journal:  Chem Rev       Date:  2006-05       Impact factor: 60.622

4.  MUNIN: a new approach to multi-dimensional NMR spectra interpretation.

Authors:  V Y Orekhov; I V Ibraghimov; M Billeter
Journal:  J Biomol NMR       Date:  2001-05       Impact factor: 2.835

Review 5.  Dynamic personalities of proteins.

Authors:  Katherine Henzler-Wildman; Dorothee Kern
Journal:  Nature       Date:  2007-12-13       Impact factor: 49.962

Review 6.  Relaxation dispersion NMR spectroscopy as a tool for detailed studies of protein folding.

Authors:  Philipp Neudecker; Patrik Lundström; Lewis E Kay
Journal:  Biophys J       Date:  2009-03-18       Impact factor: 4.033

Review 7.  Observing biological dynamics at atomic resolution using NMR.

Authors:  Anthony K Mittermaier; Lewis E Kay
Journal:  Trends Biochem Sci       Date:  2009-10-19       Impact factor: 13.807

Review 8.  Characterization of enzyme motions by solution NMR relaxation dispersion.

Authors:  J Patrick Loria; Rebecca B Berlow; Eric D Watt
Journal:  Acc Chem Res       Date:  2008-02-19       Impact factor: 22.384

9.  The CCPN data model for NMR spectroscopy: development of a software pipeline.

Authors:  Wim F Vranken; Wayne Boucher; Tim J Stevens; Rasmus H Fogh; Anne Pajon; Miguel Llinas; Eldon L Ulrich; John L Markley; John Ionides; Ernest D Laue
Journal:  Proteins       Date:  2005-06-01

10.  Time-domain Bayesian detection and estimation of noisy damped sinusoidal signals applied to NMR spectroscopy.

Authors:  Denis V Rubtsov; Julian L Griffin
Journal:  J Magn Reson       Date:  2007-08-19       Impact factor: 2.229

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  1 in total

1.  Extreme Nonuniform Sampling for Protein NMR Dynamics Studies in Minimal Time.

Authors:  Gregory Jameson; Alexandar L Hansen; Dawei Li; Lei Bruschweiler-Li; Rafael Brüschweiler
Journal:  J Am Chem Soc       Date:  2019-10-14       Impact factor: 15.419

  1 in total

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