Literature DB >> 20594882

Combining methods for speeding up multi-dimensional acquisition. Sparse sampling and fast pulsing methods for unfolded proteins.

Dominique Marion1.   

Abstract

Resonance assignment of intrinsically disordered proteins is made difficult by the extensive spectral overlaps. High-resolution 3D and 4D spectra are thus essential for this purpose. We have adapted the series of 3D BEST-experiments proposed by Lescop et al. [E. Lescop, P. Schanda, B. Brutscher, A set of BEST triple-resonance experiments for time-optimized protein resonance assignment, J. Magn. Reson. 187 (2007) 163-169] to the case of unfolded proteins. Longer acquisitions in the indirect dimensions are obtained by implementing semi-constant time evolution and sparse sampling. Using maximum entropy reconstruction for the indirect dimensions, the artifact intensity due to sparse sampling can be reduced to a level similar to the other sources of noise. The reduction of the sampled increments and the shorter duration of individual transients makes it possible to record a 4D experiment with reasonable resolution in less than 60 h. (c) 2010 Elsevier Inc. All rights reserved.

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Year:  2010        PMID: 20594882     DOI: 10.1016/j.jmr.2010.06.007

Source DB:  PubMed          Journal:  J Magn Reson        ISSN: 1090-7807            Impact factor:   2.229


  6 in total

1.  Sparsely sampled high-resolution 4-D experiments for efficient backbone resonance assignment of disordered proteins.

Authors:  Jie Wen; Jihui Wu; Pei Zhou
Journal:  J Magn Reson       Date:  2011-01-04       Impact factor: 2.229

2.  Resonance assignment for a particularly challenging protein based on systematic unlabeling of amino acids to complement incomplete NMR data sets.

Authors:  Peter Bellstedt; Thomas Seiboth; Sabine Häfner; Henriette Kutscha; Ramadurai Ramachandran; Matthias Görlach
Journal:  J Biomol NMR       Date:  2013-08-14       Impact factor: 2.835

3.  Nonuniform sampling and maximum entropy reconstruction in multidimensional NMR.

Authors:  Jeffrey C Hoch; Mark W Maciejewski; Mehdi Mobli; Adam D Schuyler; Alan S Stern
Journal:  Acc Chem Res       Date:  2014-01-09       Impact factor: 22.384

4.  Nonuniform sampling of hypercomplex multidimensional NMR experiments: Dimensionality, quadrature phase and randomization.

Authors:  Adam D Schuyler; Mark W Maciejewski; Alan S Stern; Jeffrey C Hoch
Journal:  J Magn Reson       Date:  2015-03-10       Impact factor: 2.229

Review 5.  NMR of Macromolecular Assemblies and Machines at 1 GHz and Beyond: New Transformative Opportunities for Molecular Structural Biology.

Authors:  Caitlin M Quinn; Mingzhang Wang; Tatyana Polenova
Journal:  Methods Mol Biol       Date:  2018

6.  CH3-specific NMR assignment of alanine, isoleucine, leucine and valine methyl groups in high molecular weight proteins using a single sample.

Authors:  Rime Kerfah; Olivier Hamelin; Jérôme Boisbouvier; Dominique Marion
Journal:  J Biomol NMR       Date:  2015-11-13       Impact factor: 2.835

  6 in total

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