Literature DB >> 25781623

Multimodal Segmentation of Optic Disc and Cup From SD-OCT and Color Fundus Photographs Using a Machine-Learning Graph-Based Approach.

Mohammad Saleh Miri, Michael D Abràmoff, Kyungmoo Lee, Meindert Niemeijer, Jui-Kai Wang, Young H Kwon, Mona K Garvin.   

Abstract

In this work, a multimodal approach is proposed to use the complementary information from fundus photographs and spectral domain optical coherence tomography (SD-OCT) volumes in order to segment the optic disc and cup boundaries. The problem is formulated as an optimization problem where the optimal solution is obtained using a machine-learning theoretical graph-based method. In particular, first the fundus photograph is registered to the 2D projection of the SD-OCT volume. Three in-region cost functions are designed using a random forest classifier corresponding to three regions of cup, rim, and background. Next, the volumes are resampled to create radial scans in which the Bruch's Membrane Opening (BMO) endpoints are easier to detect. Similar to in-region cost function design, the disc-boundary cost function is designed using a random forest classifier for which the features are created by applying the Haar Stationary Wavelet Transform (SWT) to the radial projection image. A multisurface graph-based approach utilizes the in-region and disc-boundary cost images to segment the boundaries of optic disc and cup under feasibility constraints. The approach is evaluated on 25 multimodal image pairs from 25 subjects in a leave-one-out fashion (by subject). The performances of the graph-theoretic approach using three sets of cost functions are compared: 1) using unimodal (OCT only) in-region costs, 2) using multimodal in-region costs, and 3) using multimodal in-region and disc-boundary costs. Results show that the multimodal approaches outperform the unimodal approach in segmenting the optic disc and cup.

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Mesh:

Year:  2015        PMID: 25781623      PMCID: PMC4560662          DOI: 10.1109/TMI.2015.2412881

Source DB:  PubMed          Journal:  IEEE Trans Med Imaging        ISSN: 0278-0062            Impact factor:   10.048


  17 in total

1.  Optic nerve head segmentation.

Authors:  James Lowell; Andrew Hunter; David Steel; Ansu Basu; Robert Ryder; Eric Fletcher; Lee Kennedy
Journal:  IEEE Trans Med Imaging       Date:  2004-02       Impact factor: 10.048

2.  Automated segmentation of neural canal opening and optic cup in 3D spectral optical coherence tomography volumes of the optic nerve head.

Authors:  Zhihong Hu; Michael D Abràmoff; Young H Kwon; Kyungmoo Lee; Mona K Garvin
Journal:  Invest Ophthalmol Vis Sci       Date:  2010-06-16       Impact factor: 4.799

3.  Automated segmentation of 3-D spectral OCT retinal blood vessels by neural canal opening false positive suppression.

Authors:  Zhihong Hu; Meindert Niemeijer; Michael D Abràmoft; Kyungmoo Lee; Mona K Garvin
Journal:  Med Image Comput Comput Assist Interv       Date:  2010

4.  Automated segmentation of the optic nerve head for diagnosis of glaucoma.

Authors:  R Chrástek; M Wolf; K Donath; H Niemann; D Paulus; T Hothorn; B Lausen; R Lämmer; C Y Mardin; G Michelson
Journal:  Med Image Anal       Date:  2005-04-08       Impact factor: 8.545

5.  Automated segmentation of the optic disc from stereo color photographs using physiologically plausible features.

Authors:  Michael D Abràmoff; Wallace L M Alward; Emily C Greenlee; Lesya Shuba; Chan Y Kim; John H Fingert; Young H Kwon
Journal:  Invest Ophthalmol Vis Sci       Date:  2007-04       Impact factor: 4.799

6.  Automated segmentation of the cup and rim from spectral domain OCT of the optic nerve head.

Authors:  Michael D Abràmoff; Kyungmoo Lee; Meindert Niemeijer; Wallace L M Alward; Emily C Greenlee; Mona K Garvin; Milan Sonka; Young H Kwon
Journal:  Invest Ophthalmol Vis Sci       Date:  2009-07-15       Impact factor: 4.799

7.  Automated 3-D intraretinal layer segmentation of macular spectral-domain optical coherence tomography images.

Authors:  Mona Kathryn Garvin; Michael David Abràmoff; Xiaodong Wu; Stephen R Russell; Trudy L Burns; Milan Sonka
Journal:  IEEE Trans Med Imaging       Date:  2009-03-10       Impact factor: 10.048

8.  Segmentation of the optic disc in 3-D OCT scans of the optic nerve head.

Authors:  Kyungmoo Lee; Meindert Niemeijer; Mona K Garvin; Young H Kwon; Milan Sonka; Michael D Abramoff
Journal:  IEEE Trans Med Imaging       Date:  2009-09-15       Impact factor: 10.048

9.  Enhanced detection of open-angle glaucoma with an anatomically accurate optical coherence tomography-derived neuroretinal rim parameter.

Authors:  Balwantray C Chauhan; Neil O'Leary; Faisal A AlMobarak; Alexandre S C Reis; Hongli Yang; Glen P Sharpe; Donna M Hutchison; Marcelo T Nicolela; Claude F Burgoyne
Journal:  Ophthalmology       Date:  2012-12-23       Impact factor: 12.079

10.  Registration of OCT fundus images with color fundus photographs based on blood vessel ridges.

Authors:  Ying Li; Giovanni Gregori; Robert W Knighton; Brandon J Lujan; Philip J Rosenfeld
Journal:  Opt Express       Date:  2011-01-03       Impact factor: 3.894

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  16 in total

1.  Automated segmentation of peripapillary retinal boundaries in OCT combining a convolutional neural network and a multi-weights graph search.

Authors:  Pengxiao Zang; Jie Wang; Tristan T Hormel; Liang Liu; David Huang; Yali Jia
Journal:  Biomed Opt Express       Date:  2019-08-01       Impact factor: 3.732

2.  Active contour method for ILM segmentation in ONH volume scans in retinal OCT.

Authors:  Kay Gawlik; Frank Hausser; Friedemann Paul; Alexander U Brandt; Ella Maria Kadas
Journal:  Biomed Opt Express       Date:  2018-11-28       Impact factor: 3.732

3.  Multimodal registration of SD-OCT volumes and fundus photographs using histograms of oriented gradients.

Authors:  Mohammad Saleh Miri; Michael D Abràmoff; Young H Kwon; Mona K Garvin
Journal:  Biomed Opt Express       Date:  2016-11-23       Impact factor: 3.732

4.  Automated boundary detection of the optic disc and layer segmentation of the peripapillary retina in volumetric structural and angiographic optical coherence tomography.

Authors:  Pengxiao Zang; Simon S Gao; Thomas S Hwang; Christina J Flaxel; David J Wilson; John C Morrison; David Huang; Dengwang Li; Yali Jia
Journal:  Biomed Opt Express       Date:  2017-02-01       Impact factor: 3.732

Review 5.  Medical Image Analysis using Convolutional Neural Networks: A Review.

Authors:  Syed Muhammad Anwar; Muhammad Majid; Adnan Qayyum; Muhammad Awais; Majdi Alnowami; Muhammad Khurram Khan
Journal:  J Med Syst       Date:  2018-10-08       Impact factor: 4.460

Review 6.  [Screening and management of retinal diseases using digital medicine].

Authors:  B S Gerendas; S M Waldstein; U Schmidt-Erfurth
Journal:  Ophthalmologe       Date:  2018-09       Impact factor: 1.059

7.  Segmentation of parotid glands from registered CT and MR images.

Authors:  Domen Močnik; Bulat Ibragimov; Lei Xing; Primož Strojan; Boštjan Likar; Franjo Pernuš; Tomaž Vrtovec
Journal:  Phys Med       Date:  2018-06-19       Impact factor: 2.685

8.  A machine-learning graph-based approach for 3D segmentation of Bruch's membrane opening from glaucomatous SD-OCT volumes.

Authors:  Mohammad Saleh Miri; Michael D Abràmoff; Young H Kwon; Milan Sonka; Mona K Garvin
Journal:  Med Image Anal       Date:  2017-05-06       Impact factor: 8.545

9.  Optic cup segmentation from fundus images for glaucoma diagnosis.

Authors:  Man Hu; Chenghao Zhu; Xiaoxing Li; Yongli Xu
Journal:  Bioengineered       Date:  2016-10-20       Impact factor: 3.269

10.  Incorporation of gradient vector flow field in a multimodal graph-theoretic approach for segmenting the internal limiting membrane from glaucomatous optic nerve head-centered SD-OCT volumes.

Authors:  Mohammad Saleh Miri; Victor A Robles; Michael D Abràmoff; Young H Kwon; Mona K Garvin
Journal:  Comput Med Imaging Graph       Date:  2016-07-25       Impact factor: 4.790

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