Literature DB >> 20554616

Automated segmentation of neural canal opening and optic cup in 3D spectral optical coherence tomography volumes of the optic nerve head.

Zhihong Hu1, Michael D Abràmoff, Young H Kwon, Kyungmoo Lee, Mona K Garvin.   

Abstract

PURPOSE: To develop an automated approach for segmenting the neural canal opening (NCO) and cup at the level of the retinal pigment epithelium (RPE)/Bruch's membrane (BM) complex in spectral-domain optical coherence tomography (SD-OCT) volumes. To investigate the correspondence and discrepancy between the NCO-based metrics and the clinical disc margin on fundus photographs of glaucoma subjects.
METHODS: SD-OCT scans and corresponding stereo fundus photographs of the optic nerve head were obtained from 68 eyes of 34 patients with glaucoma or glaucoma suspicion. Manual planimetry was performed by three glaucoma experts to delineate a reference standard (RS) for cup and disc margins from the images. An automated graph-theoretic approach was used to identify the NCO and cup. NCO-based metrics were compared with the RS.
RESULTS: Compared with the RS disc margin, the authors found mean unsigned and signed border differences of 2.81 ± 1.48 pixels (0.084 ± 0.044 mm) and -0.99 ± 2.02 pixels (-0.030 ± 0.061 mm), respectively, for NCO segmentation. The correlations of the linear cup-to-disc (NCO) area ratio, disc (NCO) area, rim area, and cup area of the algorithm with the RS were 0.85, 0.77, 0.69, and 0.83, respectively.
CONCLUSIONS: In most eyes, the NCO-based 2D metrics, as estimated by the novel automated graph-theoretic approach to segment the NCO and cup at the level of the RPE/BM complex in SD-OCT volumes, correlate well with RS. However, a small discrepancy exists in NCO-based anatomic structures and the clinical disc margin of the RS in some eyes.

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Mesh:

Year:  2010        PMID: 20554616      PMCID: PMC3061507          DOI: 10.1167/iovs.09-4838

Source DB:  PubMed          Journal:  Invest Ophthalmol Vis Sci        ISSN: 0146-0404            Impact factor:   4.799


  16 in total

1.  3-D histomorphometry of the normal and early glaucomatous monkey optic nerve head: lamina cribrosa and peripapillary scleral position and thickness.

Authors:  Hongli Yang; J Crawford Downs; Christopher Girkin; Lisandro Sakata; Anthony Bellezza; Hilary Thompson; Claude F Burgoyne
Journal:  Invest Ophthalmol Vis Sci       Date:  2007-10       Impact factor: 4.799

2.  Intraobserver and interobserver agreement in measurement of optic disc characteristics.

Authors:  J M Tielsch; J Katz; H A Quigley; N R Miller; A Sommer
Journal:  Ophthalmology       Date:  1988-03       Impact factor: 12.079

3.  Optic disc and visual field changes in a prospective longitudinal study of patients with glaucoma: comparison of scanning laser tomography with conventional perimetry and optic disc photography.

Authors:  B C Chauhan; T A McCormick; M T Nicolela; R P LeBlanc
Journal:  Arch Ophthalmol       Date:  2001-10

4.  Quantification of nerve fiber layer thickness in normal and glaucomatous eyes using optical coherence tomography.

Authors:  J S Schuman; M R Hee; C A Puliafito; C Wong; T Pedut-Kloizman; C P Lin; E Hertzmark; J A Izatt; E A Swanson; J G Fujimoto
Journal:  Arch Ophthalmol       Date:  1995-05

5.  Automated segmentation of the optic disc from stereo color photographs using physiologically plausible features.

Authors:  Michael D Abràmoff; Wallace L M Alward; Emily C Greenlee; Lesya Shuba; Chan Y Kim; John H Fingert; Young H Kwon
Journal:  Invest Ophthalmol Vis Sci       Date:  2007-04       Impact factor: 4.799

6.  Automated segmentation of the cup and rim from spectral domain OCT of the optic nerve head.

Authors:  Michael D Abràmoff; Kyungmoo Lee; Meindert Niemeijer; Wallace L M Alward; Emily C Greenlee; Mona K Garvin; Milan Sonka; Young H Kwon
Journal:  Invest Ophthalmol Vis Sci       Date:  2009-07-15       Impact factor: 4.799

7.  Three-dimensional histomorphometry of the normal and early glaucomatous monkey optic nerve head: neural canal and subarachnoid space architecture.

Authors:  J Crawford Downs; Hongli Yang; Christopher Girkin; Lisandro Sakata; Anthony Bellezza; Hilary Thompson; Claude F Burgoyne
Journal:  Invest Ophthalmol Vis Sci       Date:  2007-07       Impact factor: 4.799

8.  Deformation of the lamina cribrosa and anterior scleral canal wall in early experimental glaucoma.

Authors:  Anthony J Bellezza; Christopher J Rintalan; Hilary W Thompson; J Crawford Downs; Richard T Hart; Claude F Burgoyne
Journal:  Invest Ophthalmol Vis Sci       Date:  2003-02       Impact factor: 4.799

9.  Rate of optic disc cup progression in treated primary open-angle glaucoma.

Authors:  Young H Kwon; Young I Kim; Mary Lucy M Pereira; Paul R Montague; M Bridget Zimmerman; Wallace L M Alward
Journal:  J Glaucoma       Date:  2003-10       Impact factor: 2.503

10.  Progressive ganglion cell loss and optic nerve degeneration in DBA/2J mice is variable and asymmetric.

Authors:  Cassandra L Schlamp; Yan Li; Joel A Dietz; Katherine T Janssen; Robert W Nickells
Journal:  BMC Neurosci       Date:  2006-10-03       Impact factor: 3.288

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  28 in total

1.  2-D pattern of nerve fiber bundles in glaucoma emerging from spectral-domain optical coherence tomography.

Authors:  Mona K Garvin; Michael D Abràmoff; Kyungmoo Lee; Meindert Niemeijer; Milan Sonka; Young H Kwon
Journal:  Invest Ophthalmol Vis Sci       Date:  2012-01-31       Impact factor: 4.799

2.  Influence of clinically invisible, but optical coherence tomography detected, optic disc margin anatomy on neuroretinal rim evaluation.

Authors:  Alexandre S C Reis; Neil O'Leary; Hongli Yang; Glen P Sharpe; Marcelo T Nicolela; Claude F Burgoyne; Balwantray C Chauhan
Journal:  Invest Ophthalmol Vis Sci       Date:  2012-04-18       Impact factor: 4.799

3.  Quantitative evaluation of papilledema from stereoscopic color fundus photographs.

Authors:  Li Tang; Randy H Kardon; Jui-Kai Wang; Mona K Garvin; Kyungmoo Lee; Michael D Abràmoff
Journal:  Invest Ophthalmol Vis Sci       Date:  2012-07-03       Impact factor: 4.799

Review 4.  Retinal imaging and image analysis.

Authors:  Michael D Abràmoff; Mona K Garvin; Milan Sonka
Journal:  IEEE Rev Biomed Eng       Date:  2010

5.  Active contour method for ILM segmentation in ONH volume scans in retinal OCT.

Authors:  Kay Gawlik; Frank Hausser; Friedemann Paul; Alexander U Brandt; Ella Maria Kadas
Journal:  Biomed Opt Express       Date:  2018-11-28       Impact factor: 3.732

6.  Towards label-free 3D segmentation of optical coherence tomography images of the optic nerve head using deep learning.

Authors:  Sripad Krishna Devalla; Tan Hung Pham; Satish Kumar Panda; Liang Zhang; Giridhar Subramanian; Anirudh Swaminathan; Chin Zhi Yun; Mohan Rajan; Sujatha Mohan; Ramaswami Krishnadas; Vijayalakshmi Senthil; John Mark S De Leon; Tin A Tun; Ching-Yu Cheng; Leopold Schmetterer; Shamira Perera; Tin Aung; Alexandre H Thiéry; Michaël J A Girard
Journal:  Biomed Opt Express       Date:  2020-10-15       Impact factor: 3.732

7.  [Bruch's membrane opening minimum rim width : Correlation and diagnostic accuracy in comparison to peripapillary retinal nerve fiber layer thickness].

Authors:  M Awe; S Khalili-Amiri; I R Volkmann; B Junker; C Framme; K Hufendiek
Journal:  Ophthalmologe       Date:  2019-01       Impact factor: 1.059

8.  Multimodal Segmentation of Optic Disc and Cup From SD-OCT and Color Fundus Photographs Using a Machine-Learning Graph-Based Approach.

Authors:  Mohammad Saleh Miri; Michael D Abràmoff; Kyungmoo Lee; Meindert Niemeijer; Jui-Kai Wang; Young H Kwon; Mona K Garvin
Journal:  IEEE Trans Med Imaging       Date:  2015-03-13       Impact factor: 10.048

9.  Similarity regularized sparse group lasso for cup to disc ratio computation.

Authors:  Jun Cheng; Zhuo Zhang; Dacheng Tao; Damon Wing Kee Wong; Jiang Liu; Mani Baskaran; Tin Aung; Tien Yin Wong
Journal:  Biomed Opt Express       Date:  2017-07-20       Impact factor: 3.732

10.  Distribution of damage to the entire retinal ganglion cell pathway: quantified using spectral-domain optical coherence tomography analysis in patients with glaucoma.

Authors:  Kyungmoo Lee; Young H Kwon; Mona K Garvin; Meindert Niemeijer; Milan Sonka; Michael D Abràmoff
Journal:  Arch Ophthalmol       Date:  2012-09
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