Literature DB >> 19278927

Automated 3-D intraretinal layer segmentation of macular spectral-domain optical coherence tomography images.

Mona Kathryn Garvin1, Michael David Abràmoff, Xiaodong Wu, Stephen R Russell, Trudy L Burns, Milan Sonka.   

Abstract

With the introduction of spectral-domain optical coherence tomography (OCT), much larger image datasets are routinely acquired compared to what was possible using the previous generation of time-domain OCT. Thus, the need for 3-D segmentation methods for processing such data is becoming increasingly important. We report a graph-theoretic segmentation method for the simultaneous segmentation of multiple 3-D surfaces that is guaranteed to be optimal with respect to the cost function and that is directly applicable to the segmentation of 3-D spectral OCT image data. We present two extensions to the general layered graph segmentation method: the ability to incorporate varying feasibility constraints and the ability to incorporate true regional information. Appropriate feasibility constraints and cost functions were learned from a training set of 13 spectral-domain OCT images from 13 subjects. After training, our approach was tested on a test set of 28 images from 14 subjects. An overall mean unsigned border positioning error of 5.69+/-2.41 microm was achieved when segmenting seven surfaces (six layers) and using the average of the manual tracings of two ophthalmologists as the reference standard. This result is very comparable to the measured interobserver variability of 5.71+/-1.98 microm.

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Year:  2009        PMID: 19278927      PMCID: PMC2911837          DOI: 10.1109/TMI.2009.2016958

Source DB:  PubMed          Journal:  IEEE Trans Med Imaging        ISSN: 0278-0062            Impact factor:   10.048


  19 in total

1.  Retinal thickness measurements from optical coherence tomography using a Markov boundary model.

Authors:  D Koozekanani; K Boyer; C Roberts
Journal:  IEEE Trans Med Imaging       Date:  2001-09       Impact factor: 10.048

2.  In vivo human retinal imaging by Fourier domain optical coherence tomography.

Authors:  Maciej Wojtkowski; Rainer Leitgeb; Andrzej Kowalczyk; Tomasz Bajraszewski; Adolf F Fercher
Journal:  J Biomed Opt       Date:  2002-07       Impact factor: 3.170

3.  Quantitative thickness measurement of retinal layers imaged by optical coherence tomography.

Authors:  Mahnaz Shahidi; Zhangwei Wang; Ruth Zelkha
Journal:  Am J Ophthalmol       Date:  2005-06       Impact factor: 5.258

4.  Delineating fluid-filled region boundaries in optical coherence tomography images of the retina.

Authors:  Delia Cabrera Fernández
Journal:  IEEE Trans Med Imaging       Date:  2005-08       Impact factor: 10.048

5.  Optimal surface segmentation in volumetric images--a graph-theoretic approach.

Authors:  Kang Li; Xiaodong Wu; Danny Z Chen; Milan Sonka
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  2006-01       Impact factor: 6.226

6.  Use of varying constraints in optimal 3-D graph search for segmentation of macular optical coherence tomography images.

Authors:  Mona Haeker; Michael D Abràmoff; Xiaodong Wu; Randy Kardon; Milan Sonka
Journal:  Med Image Comput Comput Assist Interv       Date:  2007

7.  Speckle reducing anisotropic diffusion.

Authors:  Yongjian Yu; Scott T Acton
Journal:  IEEE Trans Image Process       Date:  2002       Impact factor: 10.856

8.  Macular segmentation with optical coherence tomography.

Authors:  Hiroshi Ishikawa; Daniel M Stein; Gadi Wollstein; Siobahn Beaton; James G Fujimoto; Joel S Schuman
Journal:  Invest Ophthalmol Vis Sci       Date:  2005-06       Impact factor: 4.799

Review 9.  State-of-the-art retinal optical coherence tomography.

Authors:  Wolfgang Drexler; James G Fujimoto
Journal:  Prog Retin Eye Res       Date:  2007-08-11       Impact factor: 21.198

10.  Selective loss of inner retinal layer thickness in type 1 diabetic patients with minimal diabetic retinopathy.

Authors:  Hille W van Dijk; Pauline H B Kok; Mona Garvin; Milan Sonka; J Hans Devries; Robert P J Michels; Mirjam E J van Velthoven; Reinier O Schlingemann; Frank D Verbraak; Michael D Abràmoff
Journal:  Invest Ophthalmol Vis Sci       Date:  2009-01-17       Impact factor: 4.799

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  191 in total

1.  2-D pattern of nerve fiber bundles in glaucoma emerging from spectral-domain optical coherence tomography.

Authors:  Mona K Garvin; Michael D Abràmoff; Kyungmoo Lee; Meindert Niemeijer; Milan Sonka; Young H Kwon
Journal:  Invest Ophthalmol Vis Sci       Date:  2012-01-31       Impact factor: 4.799

2.  Automated segmentation of neural canal opening and optic cup in 3D spectral optical coherence tomography volumes of the optic nerve head.

Authors:  Zhihong Hu; Michael D Abràmoff; Young H Kwon; Kyungmoo Lee; Mona K Garvin
Journal:  Invest Ophthalmol Vis Sci       Date:  2010-06-16       Impact factor: 4.799

3.  Reliability of a computer-aided manual procedure for segmenting optical coherence tomography scans.

Authors:  Donald C Hood; Jungsuk Cho; Ali S Raza; Elizabeth A Dale; Min Wang
Journal:  Optom Vis Sci       Date:  2011-01       Impact factor: 1.973

4.  LOGISMOS--layered optimal graph image segmentation of multiple objects and surfaces: cartilage segmentation in the knee joint.

Authors:  Yin Yin; Xiangmin Zhang; Rachel Williams; Xiaodong Wu; Donald D Anderson; Milan Sonka
Journal:  IEEE Trans Med Imaging       Date:  2010-07-19       Impact factor: 10.048

Review 5.  Retinal imaging and image analysis.

Authors:  Michael D Abràmoff; Mona K Garvin; Milan Sonka
Journal:  IEEE Rev Biomed Eng       Date:  2010

6.  The shape of the ganglion cell plus inner plexiform layers of the normal human macula.

Authors:  Robert W Knighton; Giovanni Gregori
Journal:  Invest Ophthalmol Vis Sci       Date:  2012-10-30       Impact factor: 4.799

7.  Automated segmentation of the choroid in EDI-OCT images with retinal pathology using convolution neural networks.

Authors:  Min Chen; Jiancong Wang; Ipek Oguz; Brian L VanderBeek; James C Gee
Journal:  Fetal Infant Ophthalmic Med Image Anal (2017)       Date:  2017-09-09

8.  Relationships of retinal structure and humphrey 24-2 visual field thresholds in patients with glaucoma.

Authors:  Hrvoje Bogunović; Young H Kwon; Adnan Rashid; Kyungmoo Lee; Douglas B Critser; Mona K Garvin; Milan Sonka; Michael D Abràmoff
Journal:  Invest Ophthalmol Vis Sci       Date:  2014-12-09       Impact factor: 4.799

9.  Supervised learning and dimension reduction techniques for quantification of retinal fluid in optical coherence tomography images.

Authors:  A Breger; M Ehler; H Bogunovic; S M Waldstein; A-M Philip; U Schmidt-Erfurth; B S Gerendas
Journal:  Eye (Lond)       Date:  2017-04-21       Impact factor: 3.775

10.  Segmentation Based Sparse Reconstruction of Optical Coherence Tomography Images.

Authors:  Leyuan Fang; Shutao Li; David Cunefare; Sina Farsiu
Journal:  IEEE Trans Med Imaging       Date:  2016-09-20       Impact factor: 10.048

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