Literature DB >> 25715743

Eukaryotic enhancers: common features, regulation, and participation in diseases.

Maksim Erokhin1, Yegor Vassetzky, Pavel Georgiev, Darya Chetverina.   

Abstract

Enhancers are positive DNA regulatory sequences controlling temporal and tissue-specific gene expression. These elements act independently of their orientation and distance relative to the promoters of target genes. Enhancers act through a variety of transcription factors that ensure their correct match with target promoters and consequent gene activation. There is a growing body of evidence on association of enhancers with transcription factors, co-activators, histone chromatin marks, and lncRNAs. Alterations in enhancers lead to misregulation of gene expression, causing a number of human diseases. In this review, we focus on the common characteristics of enhancers required for transcription stimulation.

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Year:  2015        PMID: 25715743     DOI: 10.1007/s00018-015-1871-9

Source DB:  PubMed          Journal:  Cell Mol Life Sci        ISSN: 1420-682X            Impact factor:   9.261


  187 in total

1.  Proximity among distant regulatory elements at the beta-globin locus requires GATA-1 and FOG-1.

Authors:  Christopher R Vakoc; Danielle L Letting; Nele Gheldof; Tomoyuki Sawado; M A Bender; Mark Groudine; Mitchell J Weiss; Job Dekker; Gerd A Blobel
Journal:  Mol Cell       Date:  2005-02-04       Impact factor: 17.970

2.  Transcription of bxd noncoding RNAs promoted by trithorax represses Ubx in cis by transcriptional interference.

Authors:  Svetlana Petruk; Yurii Sedkov; Kristen M Riley; Jacob Hodgson; Francois Schweisguth; Susumu Hirose; James B Jaynes; Hugh W Brock; Alexander Mazo
Journal:  Cell       Date:  2006-12-15       Impact factor: 41.582

3.  Paused Pol II captures enhancer activity and acts as a potent insulator.

Authors:  Leighton J Core; John T Lis
Journal:  Genes Dev       Date:  2009-07-15       Impact factor: 11.361

Review 4.  Functional and mechanistic diversity of distal transcription enhancers.

Authors:  Michael Bulger; Mark Groudine
Journal:  Cell       Date:  2011-02-04       Impact factor: 41.582

5.  In vivo sequence requirements of the SV40 early promotor region.

Authors:  C Benoist; P Chambon
Journal:  Nature       Date:  1981-03-26       Impact factor: 49.962

6.  Nucleotide sequence of the partially deleted D4Z4 locus in a patient with FSHD identifies a putative gene within each 3.3 kb element.

Authors:  J Gabriëls; M C Beckers; H Ding; A De Vriese; S Plaisance; S M van der Maarel; G W Padberg; R R Frants; J E Hewitt; D Collen; A Belayew
Journal:  Gene       Date:  1999-08-05       Impact factor: 3.688

7.  A 52-kb deletion in the SOST-MEOX1 intergenic region on 17q12-q21 is associated with van Buchem disease in the Dutch population.

Authors:  Karen Staehling-Hampton; Sean Proll; Bryan W Paeper; Lei Zhao; Patrick Charmley; Analisa Brown; Jessica C Gardner; David Galas; Randall C Schatzman; Peter Beighton; Socrates Papapoulos; Herman Hamersma; Mary E Brunkow
Journal:  Am J Med Genet       Date:  2002-06-15

8.  A distant gene deletion affects beta-globin gene function in an atypical gamma delta beta-thalassemia.

Authors:  P Curtin; M Pirastu; Y W Kan; J A Gobert-Jones; A D Stephens; H Lehmann
Journal:  J Clin Invest       Date:  1985-10       Impact factor: 14.808

Review 9.  Genome organization and long-range regulation of gene expression by enhancers.

Authors:  Andrea Smallwood; Bing Ren
Journal:  Curr Opin Cell Biol       Date:  2013-03-04       Impact factor: 8.382

10.  Long-range conserved non-coding SHOX sequences regulate expression in developing chicken limb and are associated with short stature phenotypes in human patients.

Authors:  Nitin Sabherwal; Fiona Bangs; Ralph Röth; Birgit Weiss; Karin Jantz; Eva Tiecke; Georg K Hinkel; Christiane Spaich; Berthold P Hauffa; Hetty van der Kamp; Johannes Kapeller; Cheryll Tickle; Gudrun Rappold
Journal:  Hum Mol Genet       Date:  2007-01-02       Impact factor: 6.150

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  19 in total

Review 1.  Flexibility and Disorder in Gene Regulation: LacI/GalR and Hox Proteins.

Authors:  Sarah E Bondos; Liskin Swint-Kruse; Kathleen S Matthews
Journal:  J Biol Chem       Date:  2015-09-04       Impact factor: 5.157

2.  The Role of GC-Rich Sequences from the Promoter Region of the Drosophila melanogaster yellow Gene in the Enhancer- Dependent Activation of Transcription.

Authors:  M V Kostyuchenko; A K Golovnin; P G Georgiev; L S Melnikova
Journal:  Dokl Biochem Biophys       Date:  2018-11-05       Impact factor: 0.788

3.  The bxdPRE/TRE element terminates passing through transcription.

Authors:  M M Erokhin; P V Elizar'ev; P G Georgiev; D A Chetverina
Journal:  Dokl Biochem Biophys       Date:  2017-04-19       Impact factor: 0.788

4.  Characterization of enhancers and the role of the transcription factor KLF7 in regulating corneal epithelial differentiation.

Authors:  Rachel Herndon Klein; William Hu; Ghaidaa Kashgari; Ziguang Lin; Tuyen Nguyen; Michael Doan; Bogi Andersen
Journal:  J Biol Chem       Date:  2017-09-15       Impact factor: 5.157

Review 5.  Innovative Molecular Testing Strategies for Adjunctive Investigations in Hemostasis and Thrombosis.

Authors:  Elham Ghorbanpour; David Lillicrap
Journal:  Semin Thromb Hemost       Date:  2019-08-12       Impact factor: 4.180

6.  An Ultraconserved Brain-Specific Enhancer Within ADGRL3 (LPHN3) Underpins Attention-Deficit/Hyperactivity Disorder Susceptibility.

Authors:  Ariel F Martinez; Yu Abe; Sungkook Hong; Kevin Molyneux; David Yarnell; Heiko Löhr; Wolfgang Driever; Maria T Acosta; Mauricio Arcos-Burgos; Maximilian Muenke
Journal:  Biol Psychiatry       Date:  2016-07-14       Impact factor: 13.382

7.  Analysis of Polygenic Mutants Suggests a Role for Mediator in Regulating Transcriptional Activation Distance in Saccharomyces cerevisiae.

Authors:  Caitlin T Reavey; Mark J Hickman; Krista C Dobi; David Botstein; Fred Winston
Journal:  Genetics       Date:  2015-08-17       Impact factor: 4.562

8.  Brachyury, Foxa2 and the cis-Regulatory Origins of the Notochord.

Authors:  Diana S José-Edwards; Izumi Oda-Ishii; Jamie E Kugler; Yale J Passamaneck; Lavanya Katikala; Yutaka Nibu; Anna Di Gregorio
Journal:  PLoS Genet       Date:  2015-12-18       Impact factor: 5.917

9.  A Model System in S2 Cells to Test the Functional Activities of Drosophila Insulators.

Authors:  M Tikhonov; N B Gasanov; P Georgiev; O Maksimenko
Journal:  Acta Naturae       Date:  2015 Oct-Dec       Impact factor: 1.845

Review 10.  Making Sense of the Tangle: Insights into Chromatin Folding and Gene Regulation.

Authors:  Ill-Min Chung; Sarada Ketharnathan; Seung-Hyun Kim; Muthu Thiruvengadam; Mari Kavitha Rani; Govindasamy Rajakumar
Journal:  Genes (Basel)       Date:  2016-09-23       Impact factor: 4.096

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