Literature DB >> 19605681

Paused Pol II captures enhancer activity and acts as a potent insulator.

Leighton J Core1, John T Lis.   

Abstract

Enhancers act over many kilobase pairs to activate target promoters, but their activity is constrained by insulator elements that prevent indiscriminate activation of nearby genes. In the July 1, 2009, issue of Genes & Development, Chopra and colleagues (pp. 1505-1509) report that promoters containing a stalled Pol II are activated by enhancers, but these promoters also serve as insulators that block enhancers from reaching more distal genes. This new class of insulators provide critical clues to regulatory mechanisms.

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Year:  2009        PMID: 19605681      PMCID: PMC3959990          DOI: 10.1101/gad.1827709

Source DB:  PubMed          Journal:  Genes Dev        ISSN: 0890-9369            Impact factor:   11.361


  54 in total

1.  Probing long-distance regulatory interactions in the Drosophila melanogaster bithorax complex using Dam identification.

Authors:  Fabienne Cléard; Yuri Moshkin; François Karch; Robert K Maeda
Journal:  Nat Genet       Date:  2006-07-02       Impact factor: 38.330

Review 2.  Breaking barriers to transcription elongation.

Authors:  Abbie Saunders; Leighton J Core; John T Lis
Journal:  Nat Rev Mol Cell Biol       Date:  2006-08       Impact factor: 94.444

3.  High-resolution profiling of histone methylations in the human genome.

Authors:  Artem Barski; Suresh Cuddapah; Kairong Cui; Tae-Young Roh; Dustin E Schones; Zhibin Wang; Gang Wei; Iouri Chepelev; Keji Zhao
Journal:  Cell       Date:  2007-05-18       Impact factor: 41.582

Review 4.  Making connections: boundaries and insulators in Drosophila.

Authors:  Robert K Maeda; François Karch
Journal:  Curr Opin Genet Dev       Date:  2007-09-27       Impact factor: 5.578

5.  Histone replacement marks the boundaries of cis-regulatory domains.

Authors:  Yoshiko Mito; Jorja G Henikoff; Steven Henikoff
Journal:  Science       Date:  2007-03-09       Impact factor: 47.728

6.  Study of the functional interaction between Mcp insulators from the Drosophila bithorax complex: effects of insulator pairing on enhancer-promoter communication.

Authors:  Olga Kyrchanova; Stepan Toshchakov; Alexander Parshikov; Pavel Georgiev
Journal:  Mol Cell Biol       Date:  2007-02-05       Impact factor: 4.272

7.  RNA polymerase stalling at developmental control genes in the Drosophila melanogaster embryo.

Authors:  Julia Zeitlinger; Alexander Stark; Manolis Kellis; Joung-Woo Hong; Sergei Nechaev; Karen Adelman; Michael Levine; Richard A Young
Journal:  Nat Genet       Date:  2007-11-11       Impact factor: 38.330

8.  Transcription elongation controls cell fate specification in the Drosophila embryo.

Authors:  Xiaoling Wang; Chanhyo Lee; David S Gilmour; J Peter Gergen
Journal:  Genes Dev       Date:  2007-05-01       Impact factor: 11.361

Review 9.  Unraveling cis-regulatory mechanisms at the abdominal-A and Abdominal-B genes in the Drosophila bithorax complex.

Authors:  Omar S Akbari; Adam Bousum; Esther Bae; Robert A Drewell
Journal:  Dev Biol       Date:  2006-03-20       Impact factor: 3.582

Review 10.  Mammalian RNA polymerase II core promoters: insights from genome-wide studies.

Authors:  Albin Sandelin; Piero Carninci; Boris Lenhard; Jasmina Ponjavic; Yoshihide Hayashizaki; David A Hume
Journal:  Nat Rev Genet       Date:  2007-05-08       Impact factor: 53.242

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  12 in total

Review 1.  Eukaryotic enhancers: common features, regulation, and participation in diseases.

Authors:  Maksim Erokhin; Yegor Vassetzky; Pavel Georgiev; Darya Chetverina
Journal:  Cell Mol Life Sci       Date:  2015-02-26       Impact factor: 9.261

2.  Identification of biologically relevant enhancers in human erythroid cells.

Authors:  Mack Y Su; Laurie A Steiner; Hannah Bogardus; Tejaswini Mishra; Vincent P Schulz; Ross C Hardison; Patrick G Gallagher
Journal:  J Biol Chem       Date:  2013-01-22       Impact factor: 5.157

Review 3.  Advances in Chromatin Imaging at Kilobase-Scale Resolution.

Authors:  Alistair Boettiger; Sedona Murphy
Journal:  Trends Genet       Date:  2020-01-29       Impact factor: 11.639

4.  Global transcriptome analysis and enhancer landscape of human primary T follicular helper and T effector lymphocytes.

Authors:  Jason S Weinstein; Kimberly Lezon-Geyda; Yelena Maksimova; Samuel Craft; Yaoping Zhang; Mack Su; Vincent P Schulz; Joseph Craft; Patrick G Gallagher
Journal:  Blood       Date:  2014-10-20       Impact factor: 22.113

Review 5.  Promoter proximal pausing and the control of gene expression.

Authors:  Jian Li; David S Gilmour
Journal:  Curr Opin Genet Dev       Date:  2011-02-14       Impact factor: 5.578

6.  Monovalent and unpoised status of most genes in undifferentiated cell-enriched Drosophila testis.

Authors:  Qiang Gan; Dustin E Schones; Suk Ho Eun; Gang Wei; Kairong Cui; Keji Zhao; Xin Chen
Journal:  Genome Biol       Date:  2010-04-15       Impact factor: 13.583

7.  CTCF regulates Kaposi's sarcoma-associated herpesvirus latency transcription by nucleosome displacement and RNA polymerase programming.

Authors:  Hyojeung Kang; Hyosun Cho; Gi-Ho Sung; Paul M Lieberman
Journal:  J Virol       Date:  2012-11-28       Impact factor: 5.103

8.  GeSICA: genome segmentation from intra-chromosomal associations.

Authors:  Lin Liu; Yiqian Zhang; Jianxing Feng; Ning Zheng; Junfeng Yin; Yong Zhang
Journal:  BMC Genomics       Date:  2012-05-04       Impact factor: 3.969

Review 9.  Chromosomal organization at the level of gene complexes.

Authors:  Vivek S Chopra
Journal:  Cell Mol Life Sci       Date:  2010-11-16       Impact factor: 9.261

10.  Distinct mechanisms for induction and tolerance regulate the immediate early genes encoding interleukin 1β and tumor necrosis factor α.

Authors:  Juraj Adamik; Kent Z Q Wang; Sebnem Unlu; An-Jey A Su; Gillian M Tannahill; Deborah L Galson; Luke A O'Neill; Philip E Auron
Journal:  PLoS One       Date:  2013-08-01       Impact factor: 3.240

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