Literature DB >> 21295696

Functional and mechanistic diversity of distal transcription enhancers.

Michael Bulger1, Mark Groudine.   

Abstract

Biological differences among metazoans and between cell types in a given organism arise in large part due to differences in gene expression patterns. Gene-distal enhancers are key contributors to these expression patterns, exhibiting both sequence diversity and cell type specificity. Studies of long-range interactions indicate that enhancers are often important determinants of nuclear organization, contributing to a general model for enhancer function that involves direct enhancer-promoter contact. However, mechanisms for enhancer function are emerging that do not fit solely within such a model, suggesting that enhancers as a class of DNA regulatory element may be functionally and mechanistically diverse.
Copyright © 2011 Elsevier Inc. All rights reserved.

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Year:  2011        PMID: 21295696      PMCID: PMC3742076          DOI: 10.1016/j.cell.2011.01.024

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  124 in total

Review 1.  Looping versus linking: toward a model for long-distance gene activation.

Authors:  M Bulger; M Groudine
Journal:  Genes Dev       Date:  1999-10-01       Impact factor: 11.361

Review 2.  Distant liaisons: long-range enhancer-promoter interactions in Drosophila.

Authors:  D Dorsett
Journal:  Curr Opin Genet Dev       Date:  1999-10       Impact factor: 5.578

3.  Proximity among distant regulatory elements at the beta-globin locus requires GATA-1 and FOG-1.

Authors:  Christopher R Vakoc; Danielle L Letting; Nele Gheldof; Tomoyuki Sawado; M A Bender; Mark Groudine; Mitchell J Weiss; Job Dekker; Gerd A Blobel
Journal:  Mol Cell       Date:  2005-02-04       Impact factor: 17.970

4.  A common sex-dependent mutation in a RET enhancer underlies Hirschsprung disease risk.

Authors:  Eileen Sproat Emison; Andrew S McCallion; Carl S Kashuk; Richard T Bush; Elizabeth Grice; Shin Lin; Matthew E Portnoy; David J Cutler; Eric D Green; Aravinda Chakravarti
Journal:  Nature       Date:  2005-04-14       Impact factor: 49.962

5.  DNase-chip: a high-resolution method to identify DNase I hypersensitive sites using tiled microarrays.

Authors:  Gregory E Crawford; Sean Davis; Peter C Scacheri; Gabriel Renaud; Mohamad J Halawi; Michael R Erdos; Roland Green; Paul S Meltzer; Tyra G Wolfsberg; Francis S Collins
Journal:  Nat Methods       Date:  2006-07       Impact factor: 28.547

6.  Elimination of a long-range cis-regulatory module causes complete loss of limb-specific Shh expression and truncation of the mouse limb.

Authors:  Tomoko Sagai; Masaki Hosoya; Youichi Mizushina; Masaru Tamura; Toshihiko Shiroishi
Journal:  Development       Date:  2005-02       Impact factor: 6.868

7.  The locus control region is required for association of the murine beta-globin locus with engaged transcription factories during erythroid maturation.

Authors:  Tobias Ragoczy; M A Bender; Agnes Telling; Rachel Byron; Mark Groudine
Journal:  Genes Dev       Date:  2006-05-16       Impact factor: 11.361

8.  CTCF binding at the H19 imprinting control region mediates maternally inherited higher-order chromatin conformation to restrict enhancer access to Igf2.

Authors:  Sreenivasulu Kurukuti; Vijay Kumar Tiwari; Gholamreza Tavoosidana; Elena Pugacheva; Adele Murrell; Zhihu Zhao; Victor Lobanenkov; Wolf Reik; Rolf Ohlsson
Journal:  Proc Natl Acad Sci U S A       Date:  2006-06-30       Impact factor: 11.205

9.  DNA looping induced by a transcriptional enhancer in vivo.

Authors:  Michael Petrascheck; Dominik Escher; Tokameh Mahmoudi; C Peter Verrijzer; Walter Schaffner; Alcide Barberis
Journal:  Nucleic Acids Res       Date:  2005-07-07       Impact factor: 16.971

Review 10.  Long-range control of gene expression: emerging mechanisms and disruption in disease.

Authors:  Dirk A Kleinjan; Veronica van Heyningen
Journal:  Am J Hum Genet       Date:  2004-11-17       Impact factor: 11.025

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  416 in total

1.  Robust Hi-C Maps of Enhancer-Promoter Interactions Reveal the Function of Non-coding Genome in Neural Development and Diseases.

Authors:  Leina Lu; Xiaoxiao Liu; Wei-Kai Huang; Paola Giusti-Rodríguez; Jian Cui; Shanshan Zhang; Wanying Xu; Zhexing Wen; Shufeng Ma; Jonathan D Rosen; Zheng Xu; Cynthia F Bartels; Riki Kawaguchi; Ming Hu; Peter C Scacheri; Zhili Rong; Yun Li; Patrick F Sullivan; Hongjun Song; Guo-Li Ming; Yan Li; Fulai Jin
Journal:  Mol Cell       Date:  2020-06-26       Impact factor: 17.970

Review 2.  Enhancers: multi-dimensional signal integrators.

Authors:  Fulai Jin; Yan Li; Bing Ren; Rama Natarajan
Journal:  Transcription       Date:  2011 Sep-Oct

3.  Initiating RNA polymerase II and TIPs as hallmarks of enhancer activity and tissue-specificity.

Authors:  Frederic Koch; Jean-Christophe Andrau
Journal:  Transcription       Date:  2011-11-01

Review 4.  Cis-regulatory elements: molecular mechanisms and evolutionary processes underlying divergence.

Authors:  Patricia J Wittkopp; Gizem Kalay
Journal:  Nat Rev Genet       Date:  2011-12-06       Impact factor: 53.242

Review 5.  Transcription regulation by distal enhancers: who's in the loop?

Authors:  Ralph Stadhouders; Anita van den Heuvel; Petros Kolovos; Ruud Jorna; Kris Leslie; Frank Grosveld; Eric Soler
Journal:  Transcription       Date:  2012-07-01

6.  Comparing enhancer action in cis and in trans.

Authors:  Jack R Bateman; Justine E Johnson; Melissa N Locke
Journal:  Genetics       Date:  2012-05-29       Impact factor: 4.562

Review 7.  Mutations in the noncoding genome.

Authors:  Cheryl A Scacheri; Peter C Scacheri
Journal:  Curr Opin Pediatr       Date:  2015-12       Impact factor: 2.856

8.  A misplaced lncRNA causes brachydactyly in humans.

Authors:  Philipp G Maass; Andreas Rump; Herbert Schulz; Sigmar Stricker; Lisanne Schulze; Konrad Platzer; Atakan Aydin; Sigrid Tinschert; Mary B Goldring; Friedrich C Luft; Sylvia Bähring
Journal:  J Clin Invest       Date:  2012-10-24       Impact factor: 14.808

Review 9.  Unraveling quiescence-specific repressive chromatin domains.

Authors:  Sarah G Swygert; Toshio Tsukiyama
Journal:  Curr Genet       Date:  2019-05-04       Impact factor: 3.886

10.  Cis- and trans-regulatory mechanisms of gene expression in the ASJ sensory neuron of Caenorhabditis elegans.

Authors:  María González-Barrios; Juan Carlos Fierro-González; Eva Krpelanova; José Antonio Mora-Lorca; José Rafael Pedrajas; Xenia Peñate; Sebastián Chavez; Peter Swoboda; Gert Jansen; Antonio Miranda-Vizuete
Journal:  Genetics       Date:  2015-03-12       Impact factor: 4.562

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