Literature DB >> 15694345

Proximity among distant regulatory elements at the beta-globin locus requires GATA-1 and FOG-1.

Christopher R Vakoc1, Danielle L Letting, Nele Gheldof, Tomoyuki Sawado, M A Bender, Mark Groudine, Mitchell J Weiss, Job Dekker, Gerd A Blobel.   

Abstract

Recent evidence suggests that long-range enhancers and gene promoters are in close proximity, which might reflect the formation of chromatin loops. Here, we examined the mechanism for DNA looping at the beta-globin locus. By using chromosome conformation capture (3C), we show that the hematopoietic transcription factor GATA-1 and its cofactor FOG-1 are required for the physical interaction between the beta-globin locus control region (LCR) and the beta-major globin promoter. Kinetic studies reveal that GATA-1-induced loop formation correlates with the onset of beta-globin transcription and occurs independently of new protein synthesis. GATA-1 occupies the beta-major globin promoter normally in fetal liver erythroblasts from mice lacking the LCR, suggesting that GATA-1 binding to the promoter and LCR are independent events that occur prior to loop formation. Together, these data demonstrate that GATA-1 and FOG-1 are essential anchors for a tissue-specific chromatin loop, providing general insights into long-range enhancer function.

Entities:  

Mesh:

Substances:

Year:  2005        PMID: 15694345     DOI: 10.1016/j.molcel.2004.12.028

Source DB:  PubMed          Journal:  Mol Cell        ISSN: 1097-2765            Impact factor:   17.970


  260 in total

Review 1.  Enhancer and promoter interactions-long distance calls.

Authors:  Ivan Krivega; Ann Dean
Journal:  Curr Opin Genet Dev       Date:  2011-12-12       Impact factor: 5.578

Review 2.  A decade of 3C technologies: insights into nuclear organization.

Authors:  Elzo de Wit; Wouter de Laat
Journal:  Genes Dev       Date:  2012-01-01       Impact factor: 11.361

3.  Characterization of genome-wide enhancer-promoter interactions reveals co-expression of interacting genes and modes of higher order chromatin organization.

Authors:  Iouri Chepelev; Gang Wei; Dara Wangsa; Qingsong Tang; Keji Zhao
Journal:  Cell Res       Date:  2012-01-24       Impact factor: 25.617

Review 4.  The complex transcription regulatory landscape of our genome: control in three dimensions.

Authors:  Erik Splinter; Wouter de Laat
Journal:  EMBO J       Date:  2011-09-27       Impact factor: 11.598

Review 5.  Transcription regulation by distal enhancers: who's in the loop?

Authors:  Ralph Stadhouders; Anita van den Heuvel; Petros Kolovos; Ruud Jorna; Kris Leslie; Frank Grosveld; Eric Soler
Journal:  Transcription       Date:  2012-07-01

Review 6.  Organization of transcription.

Authors:  Lyubomira Chakalova; Peter Fraser
Journal:  Cold Spring Harb Perspect Biol       Date:  2010-07-28       Impact factor: 10.005

7.  8q24 prostate, breast, and colon cancer risk loci show tissue-specific long-range interaction with MYC.

Authors:  Nasim Ahmadiyeh; Mark M Pomerantz; Chiara Grisanzio; Paula Herman; Li Jia; Vanessa Almendro; Housheng Hansen He; Myles Brown; X Shirley Liu; Matt Davis; Jennifer L Caswell; Christine A Beckwith; Adam Hills; Laura Macconaill; Gerhard A Coetzee; Meredith M Regan; Matthew L Freedman
Journal:  Proc Natl Acad Sci U S A       Date:  2010-05-07       Impact factor: 11.205

Review 8.  Gene positioning.

Authors:  Carmelo Ferrai; Inês Jesus de Castro; Liron Lavitas; Mita Chotalia; Ana Pombo
Journal:  Cold Spring Harb Perspect Biol       Date:  2010-05-19       Impact factor: 10.005

9.  BRG1 requirement for long-range interaction of a locus control region with a downstream promoter.

Authors:  Shin-Il Kim; Scott J Bultman; Christine M Kiefer; Ann Dean; Emery H Bresnick
Journal:  Proc Natl Acad Sci U S A       Date:  2009-01-26       Impact factor: 11.205

10.  GA-binding protein and p300 are essential components of a retinoic acid-induced enhanceosome in myeloid cells.

Authors:  Karen K Resendes; Alan G Rosmarin
Journal:  Mol Cell Biol       Date:  2006-04       Impact factor: 4.272

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.