Literature DB >> 17174895

Transcription of bxd noncoding RNAs promoted by trithorax represses Ubx in cis by transcriptional interference.

Svetlana Petruk1, Yurii Sedkov, Kristen M Riley, Jacob Hodgson, Francois Schweisguth, Susumu Hirose, James B Jaynes, Hugh W Brock, Alexander Mazo.   

Abstract

Much of the genome is transcribed into long noncoding RNAs (ncRNAs). Previous data suggested that bithoraxoid (bxd) ncRNAs of the Drosophila bithorax complex (BX-C) prevent silencing of Ultrabithorax (Ubx) and recruit activating proteins of the trithorax group (trxG) to their maintenance elements (MEs). We found that, surprisingly, Ubx and several bxd ncRNAs are expressed in nonoverlapping patterns in both embryos and imaginal discs, suggesting that transcription of these ncRNAs is associated with repression, not activation, of Ubx. Our data rule out siRNA or miRNA-based mechanisms for repression by bxd ncRNAs. Rather, ncRNA transcription itself, acting in cis, represses Ubx. The Trithorax complex TAC1 binds the Ubx coding region in nuclei expressing Ubx, and the bxd region in nuclei not expressing Ubx. We propose that TAC1 promotes the mosaic pattern of Ubx expression by facilitating transcriptional elongation of bxd ncRNAs, which represses Ubx transcription.

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Year:  2006        PMID: 17174895      PMCID: PMC1866366          DOI: 10.1016/j.cell.2006.10.039

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  48 in total

1.  Site-specific recognition of a 70-base-pair element containing d(GA)(n) repeats mediates bithoraxoid polycomb group response element-dependent silencing.

Authors:  J W Hodgson; B Argiropoulos; H W Brock
Journal:  Mol Cell Biol       Date:  2001-07       Impact factor: 4.272

Review 2.  Computational genomics of noncoding RNA genes.

Authors:  Sean R Eddy
Journal:  Cell       Date:  2002-04-19       Impact factor: 41.582

Review 3.  Stealth regulation: biological circuits with small RNA switches.

Authors:  Susan Gottesman
Journal:  Genes Dev       Date:  2002-11-15       Impact factor: 11.361

Review 4.  Tails of intrigue: phosphorylation of RNA polymerase II mediates histone methylation.

Authors:  Michael Hampsey; Danny Reinberg
Journal:  Cell       Date:  2003-05-16       Impact factor: 41.582

5.  Characterization of the intergenic RNA profile at abdominal-A and Abdominal-B in the Drosophila bithorax complex.

Authors:  Esther Bae; Vincent C Calhoun; Michael Levine; Edward B Lewis; Robert A Drewell
Journal:  Proc Natl Acad Sci U S A       Date:  2002-12-12       Impact factor: 11.205

6.  Global and Hox-specific roles for the MLL1 methyltransferase.

Authors:  Matthew G Guenther; Richard G Jenner; Brett Chevalier; Tatsuya Nakamura; Carlo M Croce; Eli Canaani; Richard A Young
Journal:  Proc Natl Acad Sci U S A       Date:  2005-06-07       Impact factor: 11.205

7.  Histone methylation by the Drosophila epigenetic transcriptional regulator Ash1.

Authors:  Christian Beisel; Axel Imhof; Jaime Greene; Elisabeth Kremmer; Frank Sauer
Journal:  Nature       Date:  2002-10-09       Impact factor: 49.962

8.  Transcription through intergenic chromosomal memory elements of the Drosophila bithorax complex correlates with an epigenetic switch.

Authors:  Gerhard Rank; Matthias Prestel; Renato Paro
Journal:  Mol Cell Biol       Date:  2002-11       Impact factor: 4.272

9.  Transcription through the iab-7 cis-regulatory domain of the bithorax complex interferes with maintenance of Polycomb-mediated silencing.

Authors:  Ilham Hogga; François Karch
Journal:  Development       Date:  2002-11       Impact factor: 6.868

10.  Transcription activates repressed domains in the Drosophila bithorax complex.

Authors:  Welcome Bender; Daniel P Fitzgerald
Journal:  Development       Date:  2002-11       Impact factor: 6.868

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  127 in total

Review 1.  Trithorax group proteins: switching genes on and keeping them active.

Authors:  Bernd Schuettengruber; Anne-Marie Martinez; Nicola Iovino; Giacomo Cavalli
Journal:  Nat Rev Mol Cell Biol       Date:  2011-11-23       Impact factor: 94.444

2.  Long Non-Coding RNAs (lncRNAs) of Sea Cucumber: Large-Scale Prediction, Expression Profiling, Non-Coding Network Construction, and lncRNA-microRNA-Gene Interaction Analysis of lncRNAs in Apostichopus japonicus and Holothuria glaberrima During LPS Challenge and Radial Organ Complex Regeneration.

Authors:  Chuang Mu; Ruijia Wang; Tianqi Li; Yuqiang Li; Meilin Tian; Wenqian Jiao; Xiaoting Huang; Lingling Zhang; Xiaoli Hu; Shi Wang; Zhenmin Bao
Journal:  Mar Biotechnol (NY)       Date:  2016-07-09       Impact factor: 3.619

Review 3.  Hox miRNA regulation within the Drosophila Bithorax complex: Patterning behavior.

Authors:  Daniel L Garaulet; Eric C Lai
Journal:  Mech Dev       Date:  2015-08-23       Impact factor: 1.882

4.  Noncoding transcription controls downstream promoters to regulate T-cell receptor alpha recombination.

Authors:  Iratxe Abarrategui; Michael S Krangel
Journal:  EMBO J       Date:  2007-09-20       Impact factor: 11.598

5.  The trithorax group and Pc group proteins are differentially involved in heterochromatin formation in Drosophila.

Authors:  Laura Fanti; Barbara Perrini; Lucia Piacentini; Maria Berloco; Enzo Marchetti; Gioacchino Palumbo; Sergio Pimpinelli
Journal:  Chromosoma       Date:  2007-09-07       Impact factor: 4.316

Review 6.  The rise of regulatory RNA.

Authors:  Kevin V Morris; John S Mattick
Journal:  Nat Rev Genet       Date:  2014-04-29       Impact factor: 53.242

7.  Larval RNAi in Drosophila?

Authors:  Sherry C Miller; Susan J Brown; Yoshinori Tomoyasu
Journal:  Dev Genes Evol       Date:  2008-07-29       Impact factor: 0.900

8.  The SAND domain protein ULTRAPETALA1 acts as a trithorax group factor to regulate cell fate in plants.

Authors:  Cristel C Carles; Jennifer C Fletcher
Journal:  Genes Dev       Date:  2009-12-01       Impact factor: 11.361

9.  CtBP levels control intergenic transcripts, PHO/YY1 DNA binding, and PcG recruitment to DNA.

Authors:  Arindam Basu; Michael L Atchison
Journal:  J Cell Biochem       Date:  2010-05       Impact factor: 4.429

10.  The lncRNA Malat1 is dispensable for mouse development but its transcription plays a cis-regulatory role in the adult.

Authors:  Bin Zhang; Gayatri Arun; Yuntao S Mao; Zsolt Lazar; Gene Hung; Gourab Bhattacharjee; Xiaokun Xiao; Carmen J Booth; Jie Wu; Chaolin Zhang; David L Spector
Journal:  Cell Rep       Date:  2012-06-28       Impact factor: 9.423

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