Literature DB >> 23623729

Architecture of human translation initiation factor 3.

Jordi Querol-Audi1, Chaomin Sun, Jacob M Vogan, M Duane Smith, Yu Gu, Jamie H D Cate, Eva Nogales.   

Abstract

Eukaryotic translation initiation factor 3 (eIF3) plays a central role in protein synthesis by organizing the formation of the 43S preinitiation complex. Using genetic tag visualization by electron microscopy, we reveal the molecular organization of ten human eIF3 subunits, including an octameric core. The structure of eIF3 bears a close resemblance to that of the proteasome lid, with a conserved spatial organization of eight core subunits containing PCI and MPN domains that coordinate functional interactions in both complexes. We further show that eIF3 subunits a and c interact with initiation factors eIF1 and eIF1A, which control the stringency of start codon selection. Finally, we find that subunit j, which modulates messenger RNA interactions with the small ribosomal subunit, makes multiple independent interactions with the eIF3 octameric core. These results highlight the conserved architecture of eIF3 and how it scaffolds key factors that control translation initiation in higher eukaryotes, including humans.
Copyright © 2013 Elsevier Ltd. All rights reserved.

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Year:  2013        PMID: 23623729      PMCID: PMC3739965          DOI: 10.1016/j.str.2013.04.002

Source DB:  PubMed          Journal:  Structure        ISSN: 0969-2126            Impact factor:   5.006


  52 in total

1.  eIF3j is located in the decoding center of the human 40S ribosomal subunit.

Authors:  Christopher S Fraser; Katherine E Berry; John W B Hershey; Jennifer A Doudna
Journal:  Mol Cell       Date:  2007-06-22       Impact factor: 17.970

Review 2.  The PCI domain: a common theme in three multiprotein complexes.

Authors:  K Hofmann; P Bucher
Journal:  Trends Biochem Sci       Date:  1998-06       Impact factor: 13.807

3.  Specific interaction of eukaryotic translation initiation factor 3 with the 5' nontranslated regions of hepatitis C virus and classical swine fever virus RNAs.

Authors:  D V Sizova; V G Kolupaeva; T V Pestova; I N Shatsky; C U Hellen
Journal:  J Virol       Date:  1998-06       Impact factor: 5.103

4.  Distinct regions of human eIF3 are sufficient for binding to the HCV IRES and the 40S ribosomal subunit.

Authors:  Qi Cai; Aleksandar Todorovic; Armann Andaya; Jingyun Gao; Julie A Leary; Jamie H D Cate
Journal:  J Mol Biol       Date:  2010-09-15       Impact factor: 5.469

5.  A conformational change in the eukaryotic translation preinitiation complex and release of eIF1 signal recognition of the start codon.

Authors:  David Maag; Christie A Fekete; Zygmunt Gryczynski; Jon R Lorsch
Journal:  Mol Cell       Date:  2005-01-21       Impact factor: 17.970

6.  Functional reconstitution of human eukaryotic translation initiation factor 3 (eIF3).

Authors:  Chaomin Sun; Aleksandar Todorovic; Jordi Querol-Audí; Yun Bai; Nancy Villa; Monica Snyder; John Ashchyan; Christopher S Lewis; Abbey Hartland; Scott Gradia; Christopher S Fraser; Jennifer A Doudna; Eva Nogales; Jamie H D Cate
Journal:  Proc Natl Acad Sci U S A       Date:  2011-12-01       Impact factor: 11.205

7.  The roles of individual eukaryotic translation initiation factors in ribosomal scanning and initiation codon selection.

Authors:  Tatyana V Pestova; Victoria G Kolupaeva
Journal:  Genes Dev       Date:  2002-11-15       Impact factor: 11.361

8.  The crystal structure of the human Mov34 MPN domain reveals a metal-free dimer.

Authors:  Mario Sanches; Beatriz S C Alves; Nilson I T Zanchin; Beatriz G Guimarães
Journal:  J Mol Biol       Date:  2007-05-10       Impact factor: 5.469

9.  The structure of the eukaryotic ribosome at 3.0 Å resolution.

Authors:  Adam Ben-Shem; Nicolas Garreau de Loubresse; Sergey Melnikov; Lasse Jenner; Gulnara Yusupova; Marat Yusupov
Journal:  Science       Date:  2011-11-17       Impact factor: 47.728

10.  Structural basis for a reciprocal regulation between SCF and CSN.

Authors:  Radoslav I Enchev; Daniel C Scott; Paula C A da Fonseca; Anne Schreiber; Julie K Monda; Brenda A Schulman; Matthias Peter; Edward P Morris
Journal:  Cell Rep       Date:  2012-09-06       Impact factor: 9.423

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  37 in total

1.  Unveiling Contacts within Macromolecular Assemblies by Solving Minimum Weight Connectivity Inference (MWC) Problems.

Authors:  Deepesh Agarwal; Christelle Caillouet; David Coudert; Frederic Cazals
Journal:  Mol Cell Proteomics       Date:  2015-04-07       Impact factor: 5.911

2.  Mechanism of cytoplasmic mRNA translation.

Authors:  Karen S Browning; Julia Bailey-Serres
Journal:  Arabidopsis Book       Date:  2015-04-24

3.  Structure of a yeast 40S-eIF1-eIF1A-eIF3-eIF3j initiation complex.

Authors:  Christopher H S Aylett; Daniel Boehringer; Jan P Erzberger; Tanja Schaefer; Nenad Ban
Journal:  Nat Struct Mol Biol       Date:  2015-02-09       Impact factor: 15.369

4.  Crystal structure of the human COP9 signalosome.

Authors:  Gondichatnahalli M Lingaraju; Richard D Bunker; Simone Cavadini; Daniel Hess; Ulrich Hassiepen; Martin Renatus; Eric S Fischer; Nicolas H Thomä
Journal:  Nature       Date:  2014-07-16       Impact factor: 49.962

5.  A Transcript-Specific eIF3 Complex Mediates Global Translational Control of Energy Metabolism.

Authors:  Meera Shah; Dan Su; Judith S Scheliga; Tomáš Pluskal; Susanna Boronat; Khatereh Motamedchaboki; Alexandre Rosa Campos; Feng Qi; Elena Hidalgo; Mitsuhiro Yanagida; Dieter A Wolf
Journal:  Cell Rep       Date:  2016-07-28       Impact factor: 9.423

6.  Interaction of p190A RhoGAP with eIF3A and Other Translation Preinitiation Factors Suggests a Role in Protein Biosynthesis.

Authors:  Prasanna Parasuraman; Peter Mulligan; James A Walker; Bihua Li; Myriam Boukhali; Wilhelm Haas; Andre Bernards
Journal:  J Biol Chem       Date:  2016-12-22       Impact factor: 5.157

7.  The Jigsaw Puzzle of mRNA Translation Initiation in Eukaryotes: A Decade of Structures Unraveling the Mechanics of the Process.

Authors:  Yaser Hashem; Joachim Frank
Journal:  Annu Rev Biophys       Date:  2018-03-01       Impact factor: 12.981

8.  Novel RNA-binding protein P311 binds eukaryotic translation initiation factor 3 subunit b (eIF3b) to promote translation of transforming growth factor β1-3 (TGF-β1-3).

Authors:  Michael M Yue; Kaosheng Lv; Stephen C Meredith; Jennifer L Martindale; Myriam Gorospe; Lucia Schuger
Journal:  J Biol Chem       Date:  2014-10-21       Impact factor: 5.157

Review 9.  eIF3: a factor for human health and disease.

Authors:  Andreia Gomes-Duarte; Rafaela Lacerda; Juliane Menezes; Luísa Romão
Journal:  RNA Biol       Date:  2017-11-13       Impact factor: 4.652

10.  Crystal structure of the proteasomal deubiquitylation module Rpn8-Rpn11.

Authors:  Ganesh Ramnath Pathare; István Nagy; Paweł Śledź; Daniel J Anderson; Han-Jie Zhou; Els Pardon; Jan Steyaert; Friedrich Förster; Andreas Bracher; Wolfgang Baumeister
Journal:  Proc Natl Acad Sci U S A       Date:  2014-02-10       Impact factor: 11.205

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