Literature DB >> 25637723

Lost in transcription: transient errors in information transfer.

Alasdair J E Gordon1, Dominik Satory1, Jennifer A Halliday1, Christophe Herman2.   

Abstract

Errors in information transfer from DNA to RNA to protein are inevitable. Here, we focus on errors that occur in nascent transcripts during transcription, epimutations. Recent approaches using novel cDNA library preparation and next-generation sequencing begin to directly determine the rate of epimutation and allow analysis of the epimutational spectrum of transcription errors, the type and sequence context of the errors produced in a transcript by an RNA polymerase. The phenotypic consequences of transcription errors have been assessed using both forward and reverse epimutation systems. These studies reveal that transient transcription errors can produce a modification of cell phenotype, partial phenotypic suppression of a mutant allele, and a heritable change in cell phenotype, epigenetic switching in a bistable gene network.
Copyright © 2015 Elsevier Ltd. All rights reserved.

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Year:  2015        PMID: 25637723      PMCID: PMC4380820          DOI: 10.1016/j.mib.2015.01.010

Source DB:  PubMed          Journal:  Curr Opin Microbiol        ISSN: 1369-5274            Impact factor:   7.934


  46 in total

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Journal:  Proc Natl Acad Sci U S A       Date:  2010-06-07       Impact factor: 11.205

Review 3.  Timescales of genetic and epigenetic inheritance.

Authors:  Oliver J Rando; Kevin J Verstrepen
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4.  Stochastic protein expression in individual cells at the single molecule level.

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5.  Transient mutators: a semiquantitative analysis of the influence of translation and transcription errors on mutation rates.

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Journal:  Genetics       Date:  1991-11       Impact factor: 4.562

6.  Potential role of phenotypic mutations in the evolution of protein expression and stability.

Authors:  Moshe Goldsmith; Dan S Tawfik
Journal:  Proc Natl Acad Sci U S A       Date:  2009-04-01       Impact factor: 11.205

Review 7.  Epigenetic switches: can infidelity govern fate in microbes?

Authors:  Dominik Satory; Alasdair J E Gordon; Jennifer A Halliday; Christophe Herman
Journal:  Curr Opin Microbiol       Date:  2011-04       Impact factor: 7.934

8.  Spectra of spontaneous mutations in Escherichia coli strains defective in mismatch correction: the nature of in vivo DNA replication errors.

Authors:  R M Schaaper; R L Dunn
Journal:  Proc Natl Acad Sci U S A       Date:  1987-09       Impact factor: 11.205

9.  Single-cell proteomic analysis of S. cerevisiae reveals the architecture of biological noise.

Authors:  John R S Newman; Sina Ghaemmaghami; Jan Ihmels; David K Breslow; Matthew Noble; Joseph L DeRisi; Jonathan S Weissman
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10.  The fidelity of transcription: RPB1 (RPO21) mutations that increase transcriptional slippage in S. cerevisiae.

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  23 in total

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Journal:  Transcription       Date:  2018-08-10

2.  Transcriptional errors and the drift barrier.

Authors:  David M McCandlish; Joshua B Plotkin
Journal:  Proc Natl Acad Sci U S A       Date:  2016-03-10       Impact factor: 11.205

Review 3.  RNA polymerase II transcriptional fidelity control and its functional interplay with DNA modifications.

Authors:  Liang Xu; Wei Wang; Jenny Chong; Ji Hyun Shin; Jun Xu; Dong Wang
Journal:  Crit Rev Biochem Mol Biol       Date:  2015-09-22       Impact factor: 8.250

4.  Heterogeneity of Stop Codon Readthrough in Single Bacterial Cells and Implications for Population Fitness.

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Journal:  Mol Cell       Date:  2017-08-03       Impact factor: 17.970

Review 5.  Transcription fidelity: New paradigms in epigenetic inheritance, genome instability and disease.

Authors:  Catherine C Bradley; Alasdair J E Gordon; Jennifer A Halliday; Christophe Herman
Journal:  DNA Repair (Amst)       Date:  2019-07-08

Review 6.  Mechanisms of protein evolution.

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Journal:  Protein Sci       Date:  2022-07       Impact factor: 6.993

7.  Conserved rates and patterns of transcription errors across bacterial growth states and lifestyles.

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Review 8.  Ribosome states signal RNA quality control.

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Review 9.  Bioinformatics-Aided Venomics.

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10.  DksA involvement in transcription fidelity buffers stochastic epigenetic change.

Authors:  Dominik Satory; Alasdair J E Gordon; Mengyu Wang; Jennifer A Halliday; Ido Golding; Christophe Herman
Journal:  Nucleic Acids Res       Date:  2015-08-24       Impact factor: 16.971

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