Literature DB >> 20534550

Visualizing high error levels during gene expression in living bacterial cells.

Mor Meyerovich1, Gideon Mamou, Sigal Ben-Yehuda.   

Abstract

To monitor inaccuracy in gene expression in living cells, we designed an experimental system in the bacterium Bacillus subtilis whereby spontaneous errors can be visualized and quantified at a single-cell level. Our strategy was to introduce mutations into a chromosomally encoded gfp allele, such that errors in protein production are reported in real time by the formation of fluorescent GFP molecules. The data reveal that the amount of errors can greatly exceed previous estimates, and that the error rate increases dramatically at lower temperatures and during stationary phase. Furthermore, we demonstrate that when facing an antibiotic threat, an increase in error level is sufficient to allow survival of bacteria carrying a mutated antibiotic-resistance gene. We propose that bacterial gene expression is error prone, frequently yielding protein molecules that differ slightly from the sequence specified by their DNA, thus generating a cellular reservoir of nonidentical protein molecules. This variation may be a key factor in increasing bacterial fitness, expanding the capability of an isogenic population to face environmental challenges.

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Year:  2010        PMID: 20534550      PMCID: PMC2895060          DOI: 10.1073/pnas.0912989107

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  47 in total

1.  On the fidelity of transcription by Escherichia coli ribonucleic acid polymerase.

Authors:  C F Springgate; L A Loeb
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2.  Why are proteins so robust to site mutations?

Authors:  Darin M Taverna; Richard A Goldstein
Journal:  J Mol Biol       Date:  2002-01-18       Impact factor: 5.469

3.  Endosymbiotic bacteria: groEL buffers against deleterious mutations.

Authors:  Mario A Fares; Mario X Ruiz-González; Andrés Moya; Santiago F Elena; Eladio Barrio
Journal:  Nature       Date:  2002-05-23       Impact factor: 49.962

4.  Directed evolution of substrate-optimized GroEL/S chaperonins.

Authors:  Jue D Wang; Christophe Herman; Kimberly A Tipton; Carol A Gross; Jonathan S Weissman
Journal:  Cell       Date:  2002-12-27       Impact factor: 41.582

5.  Protein tolerance to random amino acid change.

Authors:  Haiwei H Guo; Juno Choe; Lawrence A Loeb
Journal:  Proc Natl Acad Sci U S A       Date:  2004-06-14       Impact factor: 11.205

6.  Structural basis for substrate selection by t7 RNA polymerase.

Authors:  Dmitry Temiakov; Vsevolod Patlan; Michael Anikin; William T McAllister; Shigeyuki Yokoyama; Dmitry G Vassylyev
Journal:  Cell       Date:  2004-02-06       Impact factor: 41.582

Review 7.  DNA replication fidelity.

Authors:  Thomas A Kunkel
Journal:  J Biol Chem       Date:  2004-02-26       Impact factor: 5.157

8.  The suppression of defective translation by ppGpp and its role in the stringent response.

Authors:  P H O'Farrell
Journal:  Cell       Date:  1978-07       Impact factor: 41.582

9.  Transcription and translation initiation frequencies of the Escherichia coli lac operon.

Authors:  D Kennell; H Riezman
Journal:  J Mol Biol       Date:  1977-07       Impact factor: 5.469

10.  Comprehensive analysis of pseudogenes in prokaryotes: widespread gene decay and failure of putative horizontally transferred genes.

Authors:  Yang Liu; Paul M Harrison; Victor Kunin; Mark Gerstein
Journal:  Genome Biol       Date:  2004-08-26       Impact factor: 13.583

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  45 in total

Review 1.  DRiPs solidify: progress in understanding endogenous MHC class I antigen processing.

Authors:  Jonathan W Yewdell
Journal:  Trends Immunol       Date:  2011-09-29       Impact factor: 16.687

2.  Messy biology and the origins of evolutionary innovations.

Authors:  Dan S Tawfik
Journal:  Nat Chem Biol       Date:  2010-10       Impact factor: 15.040

3.  Mistranslation drives the evolution of robustness in TEM-1 β-lactamase.

Authors:  Sinisa Bratulic; Florian Gerber; Andreas Wagner
Journal:  Proc Natl Acad Sci U S A       Date:  2015-09-21       Impact factor: 11.205

4.  Mycobacterial mistranslation is necessary and sufficient for rifampicin phenotypic resistance.

Authors:  Babak Javid; Flavia Sorrentino; Melody Toosky; Wen Zheng; Jessica T Pinkham; Nina Jain; Miaomiao Pan; Padraig Deighan; Eric J Rubin
Journal:  Proc Natl Acad Sci U S A       Date:  2014-01-06       Impact factor: 11.205

5.  Naturally occurring aminoacyl-tRNA synthetases editing-domain mutations that cause mistranslation in Mycoplasma parasites.

Authors:  Li Li; Michal T Boniecki; Jacob D Jaffe; Brian S Imai; Peter M Yau; Zaida A Luthey-Schulten; Susan A Martinis
Journal:  Proc Natl Acad Sci U S A       Date:  2011-05-23       Impact factor: 11.205

Review 6.  Lost in transcription: transient errors in information transfer.

Authors:  Alasdair J E Gordon; Dominik Satory; Jennifer A Halliday; Christophe Herman
Journal:  Curr Opin Microbiol       Date:  2015-01-28       Impact factor: 7.934

Review 7.  Exogenous fatty acid metabolism in bacteria.

Authors:  Jiangwei Yao; Charles O Rock
Journal:  Biochimie       Date:  2017-06-28       Impact factor: 4.079

Review 8.  Genome stability versus transcript diversity.

Authors:  Brian Magnuson; Karan Bedi; Mats Ljungman
Journal:  DNA Repair (Amst)       Date:  2016-05-16

Review 9.  Function and origin of mistranslation in distinct cellular contexts.

Authors:  Michael H Schwartz; Tao Pan
Journal:  Crit Rev Biochem Mol Biol       Date:  2017-01-11       Impact factor: 8.250

Review 10.  Bacterial fatty acid metabolism in modern antibiotic discovery.

Authors:  Jiangwei Yao; Charles O Rock
Journal:  Biochim Biophys Acta Mol Cell Biol Lipids       Date:  2016-09-23       Impact factor: 4.698

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